PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937994
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 629aa    MW: 67352.9 Da    PI: 10.0302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937994genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.8e-19392488295
                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  s+r+W++++++  ++ks++y+l+ ++ +Fv+ n+L+egDf+v++  ++ ++++++++
  462937994 392 QKVLKQSDVGSLGRIVLPKKEAEIHlpELKTRDGISIPMEDiGSSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRYNELQEGDFIVIY--SDvKSGKYLIR 488
                79********************999**999***********7788*******99777777777777.********************..55588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-27383495IPR015300DNA-binding pseudobarrel domain
CDDcd100151.64E-32389490No hitNo description
SuperFamilySSF1019364.84E-22390485IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-17391493IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236391493IPR003340B3 DNA binding domain
PfamPF023624.2E-15392487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
PSERASAGEG FDALEDIDQL LDFASLSVPW DSEPLFPDVG MMIEDAMSAP PHPVGAGGPD  60
GRGGHGKALL EGSGGEEACM DAAAAAGEDL PRFFMEWLTN NRESISAEDL RGIRLKRSTI  120
EAAAARLGGG RQGTMQLLKL ILTWVHNHHL QKKRPRDAME EATAAAGSHG HGQGQLSSPG  180
VNAGYEFPAG GHDVAPAGAG TSWVPYQQPF SPPPAYGAEA VFPSGAGHGQ FTGSWAPQQQ  240
YVTFAAGGAS TGSYPMPPVV PPPFSPQYSP RMAAAVEASA TKEARKKRMA RQRRLSCLQQ  300
QRSQQLSFGQ IQSPLLQQEP SPRSVHSAPV TPSGGGWFWP SAGQQIRNPL SKCPRRRPTA  360
SAARQEKSPQ RAAASDKRQG TKADKNLRFL LQKVLKQSDV GSLGRIVLPK KEAEIHLPEL  420
KTRDGISIPM EDIGSSRVWN MRYRFWPNNK SRMYLLENTG DFVRYNELQE GDFIVIYSDV  480
KSGKYLIRGV KVRPVPEHGN GVLGKHKQGY PAERAGASSG SEDGGGVDGK PDACKSRPPH  540
SVRRARQEAA AMGQMALIRG VKVRPAPEHG NGVLGKHKQG HPAERAGASG SEDGGGVDGK  600
PDACKSRPPH SVRRARQEAA AMGQMAVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-373874911105B3 domain-containing transcription factor FUS3
6j9b_D3e-373874911105B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2792001e-139AJ279200.1 Eragrostis tef partial mRNA for transcription factor (vp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A1E5VVA10.0A0A1E5VVA1_9POAL; Regulatory protein viviparous-1
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.15e-65B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]