PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462937025
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 651aa    MW: 70505.2 Da    PI: 7.8507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462937025genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07213233526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  462937025 213 PCPDFRK-GVCRRGDMCEYAHG 233
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.8E-12173IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.61170IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-14174IPR020683Ankyrin repeat-containing domain
PfamPF136379.7E-8354No hitNo description
PROSITE profilePS5008813.253065IPR002110Ankyrin repeat
SMARTSM002480.00383062IPR002110Ankyrin repeat
PRINTSPR014154.0E-53146IPR002110Ankyrin repeat
PRINTSPR014154.0E-54963IPR002110Ankyrin repeat
SMARTSM003561.1E-5208234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4212235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375213235IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5213233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4241271IPR000571Zinc finger, CCCH-type
SMARTSM0035637243266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVAATYGSLA ALRLLLSLPS VDVNRRCSPD GTTALHCAAS GGSGTAVEVV KLLLAAGADA  60
DATDDSGRRP ADVISVPPKM FDAKFALQDL LGCPKSEHDV LRVVTRSTNS ISSPISSPTA  120
EDARSPSAAL MMTTKFADLP RVATSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS  180
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH  240
PAQYRTRLCK DGTSCNRRVC FFAHTTDELR PLTLPKGFSN SCYGDGCGNG IDARFPIISF  300
GRNVPRRQPN VPTLHLPGSS LQSSRLRTSL SARDMPADDY SLMQDLDSQL MNDLCYSRLG  360
SSTGNHSARS KSLNPSNLDD LFSAEMVSSP RYSNADQGAM FSPSHKAAIL NQFQQQQQAL  420
LSPINTGVFS PKAADNQQLP LHSSLLQASL GLSSPGRMSP RCVESGSPMS SHLAAALVQR  480
EKQHHQQQQT MRSLSSRDLG PSAARASAIV GSPLSSSWSR WGSPSGTPDW GVNGEELGKL  540
RRSSSFELRS GGDDPDLSWV HTLVKESPPE KQVTTAESIT SVGPSPLMPP SVGNGEGSGL  600
NTQLDGRDQA AVIGALLEQM QLDQQIAGAG WVRSLAHCDL LNVRAKSCVE Y
Cis-element ? help Back to Top
SourceLink
PlantRegMap462937025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2T7C2E70.0A0A2T7C2E7_9POAL; Uncharacterized protein
STRINGSb01g011150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-162CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]