PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462935275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24210.4 Da PI: 8.9832 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.7 | 3.9e-10 | 15 | 59 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg t Aa+a+++a+ l+g 462935275 15 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLG---T---AARAYDEAACLLRG 59 79********.7*********32...35****77...7...*********99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-24 | 15 | 67 | No hit | No description |
Pfam | PF00847 | 3.5E-6 | 15 | 59 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-13 | 15 | 67 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.274 | 16 | 67 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-20 | 16 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-26 | 16 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 49 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MELQFQKPRY KAVRSKFVGV RQRPSGRWVA EIKDTTQKIR MWLGTAARAY DEAACLLRGA 60 NTRTNFAGSS PPDSPLASRV RALLNHKKLK KNHGGTVTAT STASPSSSAT SSTTINFAMS 120 SGGVRTPILP AARTLTEEAS YLISASEDQF QLVASQPWAL NACSLPPTDA CSAMAELDKI 180 KPEKESPASP HAMDQAFYDT DDPSDSLWDL PPICPLSCRS LMY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462935275 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459520.2 | 2e-77 | ethylene-responsive transcription factor RAP2-11 isoform X1 | ||||
TrEMBL | A0A1B6Q9T2 | 4e-76 | A0A1B6Q9T2_SORBI; Uncharacterized protein | ||||
STRING | LPERR07G05890.1 | 1e-68 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-33 | related to AP2 11 |