PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934437
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 1407aa    MW: 155680 Da    PI: 6.1264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934437genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005112971322123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                 ++C+   Cg+ F ++ +L+ H r+ +
  462934437 1297 FECEvdLCGMKFDTRAELNAHKRNiC 1322
                 799999****************9877 PP
2zf-C2H214.50.000113221344323
                 ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                 C+   Cgk+Fs++ +LkrH+ +H
  462934437 1322 CTddSCGKRFSSHKYLKRHQVVH 1344
                 77778***************988 PP
3zf-C2H213.30.0002513801406123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
    zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                 ykC+  dCg++F+  s++ rH ++  H
  462934437 1380 YKCSapDCGQTFRYVSDYSRHRKKfnH 1406
                 99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005581.3E-48326495IPR003347JmjC domain
PROSITE profilePS5118435.044326495IPR003347JmjC domain
SuperFamilySSF511973.84E-27332491No hitNo description
PfamPF023734.8E-37359478IPR003347JmjC domain
SMARTSM003555012971319IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.97412971319IPR007087Zinc finger, C2H2
SMARTSM003550.09113201344IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.48713201349IPR007087Zinc finger, C2H2
PROSITE patternPS00028013221344IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-613261350IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-1013361378No hitNo description
SMARTSM003550.001213501374IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19613501379IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-1013511374IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013521374IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-913681403No hitNo description
Gene3DG3DSA:3.30.160.603.5E-1013751402IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1213801406IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.28113801407IPR007087Zinc finger, C2H2
PROSITE patternPS00028013821406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1407 aa     Download sequence    Send to blast
MSTNLLFPRP DSRVSALLSH SAVVDWRAIW ICLLPASSGA GLQEASVFFL DANSQGLSCC  60
FAKLKDHDVK LEDKQSFVVL MVNDTELNRE TGYGYFRDLS EERRTRKGTR IATDTETRAH  120
VPPTAPPCRV TAHKLESTPL ASPSHRIPAC AHTTREAAAY GICKVIPPYQ RPSRRFVFAH  180
LNRSLASASS DAANPTTSAS PNPASSRPES GAVFTTRHQE LGTPRRGRPP PQVLKQVWQS  240
GEQYTLERFE AKSRAFSKSY LAGLRVPTPL EVESLFWKAS EDRPIYIEYA NDVPGSGFAA  300
PEQSQRQRKR RREGESDDGE KGSGSRLSGS PWNLQAIARA PGSLTRFMPD DVPGVTSPMV  360
YIGMLFSWFA WHVEDHELHS LNFLHTGSPK TWYAVPGDRA AELEDVIRVH GYGGDSDRLA  420
SLAVLGEKTT LMSPEVLVAH GVPCCRLVQY PGEFVVTFPR AYHVGFSHGF NCGEAANFAT  480
PQWLKFAKEA AVRRAVMNYL PMLSHQQLLY LLAVSFIPRT SSLLSGSRTS RSRDRRKEER  540
ELLVKQEFLH DMISENKLLC SFLKKKPINN VVLWEPDLLP SLHSCSSGSK ILDKKSEGGC  600
RIESQQCSHK GHSSSDGTAC MTGTQSESMS TDSKPSYAIA AAEEEQVEGD ADDEGDLPFD  660
LSIDSGSLTC VACGILGFPF MAILQPSREA LEDYTKLKAL AISLAEEIEF QFDCTDVPLT  720
NASKSDLQLI NISIDDEGHE EDGRDWTSQM GLNLKYCAKL RKERSGNQER PPLSFWGLFS  780
NQPATSDVPS LKWLCRKART PYKVIGIISS SSATTAVKVE PEDTKPKIGN FEIVYEEENS  840
QQALQQCSRL QSSKLQDSDD IATMQLCTDK EDVKKQPLVD IPIALAEYPI VQQVSEGPVN  900
VDTRSQVICS SDSQDSLPPA DSTFEVERDQ ECVQSIVRSS STAVSVQQFV DDESVSMEGS  960
MNCLSSHEYS ESGNNTLRGR DEQLHVQQDQ EMTTLSNNLN RKAVGPCLID SEVKCGDAAS  1020
SILANEDDCA KTSCCLDVVT EDNKSLSDNQ PEAHDQSADR QGRLTFGCLG SAGVPSSTEP  1080
LTPHDLMSDE LQVATSHSVV TSDELKNISP NNESSQKEAV QAALVSMIPT EDGQSIRSNT  1140
FDILLGALAE ESKVADAPGK DEVGKASLTL MTLASNDQTS DEVTERKVVE MTKRDTILGI  1200
TEDCQQVDQS HDFQLSDAVS RSIGRSSRTD IICYVRRKHK RKRKPGANTD TSHSVGSFVR  1260
SPCESLRPRS RPAIVEEMIT AEASTARKGK RAKTESFECE VDLCGMKFDT RAELNAHKRN  1320
ICTDDSCGKR FSSHKYLKRH QVVHSEVRPL KCPWEGCGMT FKWLWAQTEH VRVHTGERPY  1380
KCSAPDCGQT FRYVSDYSRH RKKFNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-6512355013381Transcription factor jumonji (Jmj) family protein
6ip4_A3e-6512355013381Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307311RKRRR
212351241RRKHKRK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934437
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658772.10.0uncharacterized protein LOC100381553 isoform X2
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLI1P7M70.0I1P7M7_ORYGL; Uncharacterized protein
STRINGORGLA03G0037300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-121C2H2 family protein