PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462934417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 14755.3 Da PI: 8.4402 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.2e-20 | 9 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.......kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp +g + r++lg+f+taeeAa+a+++a+ +++g 462934417 9 KYRGVRKRP-WGKFAAEIRDPERGGsrirdpeRGgSRVWLGTFDTAEEAARAYDRAAFAMKG 69 8********.**********755446776676448************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-14 | 9 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.065 | 9 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 9 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.34E-28 | 9 | 78 | No hit | No description |
SMART | SM00380 | 1.2E-34 | 9 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-20 | 9 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.9E-12 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-12 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRIRDPER GGSRVWLGTF DTAEEAARAY 60 DRAAFAMKGA TAVLNFPAEA GRMSSGSSSS STSAPATGGR GRSRVPDSEK VELECLDDRV 120 LEEMLAEDKY SKNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-28 | 7 | 120 | 12 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462934417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727512 | 2e-57 | KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797533.1 | 2e-59 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-32 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2S3IUL6 | 6e-58 | A0A2S3IUL6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6SED7 | 6e-58 | A0A3L6SED7_PANMI; Uncharacterized protein | ||||
STRING | AC198979.4_FGP009 | 2e-57 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-21 | ERF family protein |
Publications ? help Back to Top | |||
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