PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462934411
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 624aa    MW: 66949.1 Da    PI: 5.9764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462934411genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05513538123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C+  +C ++F++k +L +H ++ +
  462934411 513 FECNidYCRMTFKTKTELSVHKKNmC 538
                89*******************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035521513535IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219536565IPR007087Zinc finger, C2H2
SMARTSM003553.3536560IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4538567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280538560IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-9552594No hitNo description
PROSITE profilePS5015710.034566595IPR007087Zinc finger, C2H2
SMARTSM003550.0092566590IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280568590IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.4E-7568589IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.88E-7584619No hitNo description
Gene3DG3DSA:3.30.160.602.2E-7590618IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035552596618IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MRIRRYAARL LSSSATTNNP ASPTPQPAAA WLHDATGDCC AFCDLAHSPT QEAPDAVKHK  60
GHIACRVPES EVKGGELVGL AQGLSAPEEP FSAKKCKVDH GHPENEADES LIVTNGGSVV  120
TEAAAKLEEA RGATLVTKAA VNIAFKAGPF VANDVTIDQE VKCGGSLVTD TIKADVTGGN  180
SHVNGWTTEL EVLKDAPVSI GVVPDPAVTE GVSLERGATT LRGATCIEPD VTGEYSIMNE  240
SGAELGVIRT ASLVNEASTE PELTERVSVT TKGVTDAGVT ITVPEVTRTG SLGYEGAVGL  300
EIAREAAELE ATEADPIASQ ADREADDTGR GSRSVEDDPA LDESQPPSSD MIGNVQVGNA  360
GETVATVVEP SQCDVADVDG SVGSTSYGHV GAKDSIVEGG AAHDKSGTPS VSCTLGVVAR  420
SIGRSERTDV ICYTRRRGKR KLDLLEVKTE NIDLDDGVSC NPYGENKTLK SNGPCESMIS  480
RAVSVDVKLA DIKRELMENS PARKVKKMKT NKFECNIDYC RMTFKTKTEL SVHKKNMCTV  540
KSCSRHFRSH KYLRRHQSVH NDDMPYKCPW EGCSIAFKWP WDRAEHFQVH AGVKPYKCMT  600
PGCSKIYKFV SDFTRHRRRC KPQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4151361923129Lysine-specific demethylase REF6
6a58_A1e-4151361923129Lysine-specific demethylase REF6
6a59_A1e-4151361923129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1434440RRRGKRK
2434441RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462934411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A3L6SAH40.0A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-39relative of early flowering 6