 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462934117 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
NF-YC |
| Protein Properties |
Length: 235aa MW: 26295.7 Da PI: 7.0325 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462934117 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 56.4 | 6.4e-18 | 52 | 128 | 22 | 98 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
arikki++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v +
462934117 52 WWARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVNK 128
569*********************************************************************99976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MRKKLGTRFP AAVLCNWDSM MRRASRIRSH AAVCTLEVWF VVSWVYESMY FWWARIKKIM 60
QADEDVGKIA LAVPVLVSRA LELFLQDLID RTYEITLQSG AKTLNSFHLK QCVKRYSSFD 120
FLTEVVNKVP DLGGADSCGD ERGLPRRRKS NGSDPENDES RSSKMAIRSS LSPRGRGRGR 180
AAPAPATSSK VDEANTDHHA DWPMPDAIGN IGVGPSGFGH LTVQVDEDED YDNED
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT062754 | 1e-127 | BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds. |
| GenBank | EU964689 | 1e-127 | EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds. |
| GenBank | JX428444 | 1e-127 | JX428444.1 Zea mays subsp. mays clone pUT3038 CA5P8 CCAAT-HAP5 type transcription factor mRNA, partial cds. |
