PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462933953
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 896aa    MW: 97672.4 Da    PI: 6.4601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462933953genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-182785357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  462933953 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
               5678****************************************************996 PP
2START157.69.9e-501653732205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+      g  g+++l +++++
  462933953 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQMY 263
                789999****************************************************7777777777.***********999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+
  462933953 264 APTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKM 363
                *********************************9999999898899****************************************************** PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++ +l+++++
  462933953 364 TTVALRHLRQ 373
                *999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17885IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.3E-152490IPR001356Homeobox domain
SuperFamilySSF466891.03E-152688IPR009057Homeodomain-like
CDDcd000861.39E-152787No hitNo description
PfamPF000466.8E-162885IPR001356Homeobox domain
CDDcd146864.08E-679118No hitNo description
PROSITE profilePS5084826.907155383IPR002913START domain
CDDcd088751.29E-71159375No hitNo description
Gene3DG3DSA:3.30.530.202.7E-21164348IPR023393START-like domain
SMARTSM002342.4E-37164374IPR002913START domain
SuperFamilySSF559613.43E-37164376No hitNo description
PfamPF018521.8E-47165373IPR002913START domain
PfamPF086709.8E-31799895IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQSTSLANDT SCESNVTTPP NPMRDASNPS GLLSIAEETF TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSAASAQQF VRAEMLPSGY LVRPCDGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGIEDVVVA CNSTKKIRNN SNAGITFGAP GGIICAKASM LLQALRHLRQ IAQETSGEVV  480
YALGRQPAVL RTFSQRLSRG FNDAISGFND DGWSIMGGDG IEDVVVACNS TKKIRNNSNA  540
GITFGAPGGI ICAKASMLLQ SVPPAVLVRF LREHRSEWAD YNIDAYLASA LKASACSLPG  600
LRPMRFSGGQ MILPLAHTVE NEEILEVVRL EGQSLTHDEA LLSRDIHLLQ LCTGIDEKSV  660
GSSFQLVFAP IDEHFPDDAP LISSGFRVIP LDMKTDGVSS GRTLDLASSL DVGSATAQAS  720
GDGSPDDCNL RSVLTIAFQF PYEMHLQDSV ATMARQYVRS IVSAVQRVSM AISPSQSGLI  780
SGQRVLSGFP EAATLARWEK PMFTFANKAG LDMLETSLIA LQDLTLDKIF DESGRKALFS  840
DISKLMEQGY VYLPSGVCMS GMGRHVSFDQ AVAWKVLGED SNVHCLAFCF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462933953
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309716.10.0homeobox-leucine zipper protein HOX10 isoform X1
RefseqXP_021309722.10.0homeobox-leucine zipper protein HOX10 isoform X1
SwissprotQ6TAQ60.0HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBLA0A4P1QVV30.0A0A4P1QVV3_LUPAN; Uncharacterized protein
STRINGSb01g050000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1849158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]