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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462933854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CAMTA | ||||||||
Protein Properties | Length: 1273aa MW: 140797 Da PI: 6.8233 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 176.2 | 4.2e-55 | 54 | 171 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 l+e +krwl+++ei++iL n++ ++++ e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr+yw 462933854 54 LSEaQKRWLRPTEICEILSNYKFFSIAPEPPNMPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYW 153 45559*********************************************************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 lLee++++ivlvhylevk 462933854 154 LLEEDFTHIVLVHYLEVK 171 ***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.127 | 50 | 176 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.1E-75 | 53 | 171 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.6E-49 | 56 | 170 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00249 | 497 | 590 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 1.8E-7 | 498 | 586 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.24E-17 | 498 | 589 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 3.9E-7 | 498 | 586 | IPR002909 | IPT domain |
CDD | cd00204 | 1.94E-12 | 669 | 791 | No hit | No description |
SuperFamily | SSF48403 | 8.08E-16 | 678 | 793 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.6E-17 | 689 | 797 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.82 | 699 | 793 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.9E-6 | 705 | 794 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.21 | 732 | 761 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.992 | 732 | 764 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 990 | 771 | 800 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 2.6E-17 | 895 | 982 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00015 | 0.045 | 905 | 927 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 906 | 935 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.007 | 907 | 926 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00248 | 990 | 962 | 991 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.72E-8 | 1090 | 1147 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 1096 | 1118 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 1097 | 1126 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.007 | 1098 | 1117 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.012 | 1119 | 1141 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.249 | 1120 | 1144 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 6.9E-4 | 1122 | 1141 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1273 aa Download sequence Send to blast |
RRPRVPPPFP XXXRATARAS CFGGGGGAFD RGGAMAEARK FVMPGQPPDF SQLLSEAQKR 60 WLRPTEICEI LSNYKFFSIA PEPPNMPASG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK 120 EAHEKLKAGS IDVLHCYYAH GEENENFQRR TYWLLEEDFT HIVLVHYLEV KGGKQSLNRA 180 KEEIMQFSNV DSPSYSNSIT SHSQVTPQNM DAAESPISGH ISEFGDTKPA KFGAADNSGA 240 SSRYHPLAEM QQPLDGVIMD DLLYPPASII GNRKGYHGEM LPRTSNLDYH SFSHHDIARL 300 FEDAGTGPGD VSRTLFDSVP FNETLTDYPN GFTEPALHSS FASLEASSLE DTSRLQSFTS 360 EALYTNHLSQ KEIEALYANH LSQKEPDALS FAGISSPEPE VNGNRYTEGS INHPLLKQSS 420 LDLLKIESTG LKKHDSFSRW MSKELAGVVD LDIKSSSDTL WSSIETVNVS DGSSVLTNEQ 480 LGAYVVSPSL SQDQLFSILD VSPSCAYIGL NTKVMVTGTF LVNKEHVEKE HVEKCTWSCM 540 FGDVEVPAEV LNDGTLRCYA PAHQSGRVPF YVTCSNRVAC SEVREFEYRD SDAQYMETSH 600 SQAIGVNEMH LHIRLEKLLS LGPENNVLSS GNEKHELMNA INSLMLDGKW SDQESPSVKE 660 KFSTARDQGM EKLVKEKLHY WLLCKINDDG KGPNVLCKEG QGVIHLVAAL GYDWAIRPII 720 VAGVNVNFRD AHGWTALHWA ASLGRERTVG ILIANGAAAG ALTDPTSEFP AGRSPADLAS 780 ANGHKGIAGF LAESALTSHL SALTIRESKD NAVDACGSLV ADDLNDTDSA QLAGDDYHTE 840 SLKGSLSAVR KSTQAAARIF QAFRVESFHR KKVVEYGDDD CGLSDERTLS LVSLKNVKAG 900 QHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQRTV GILIANGAAA GALTDPTSEF 960 PAGRSPADLA SANGHKGIAG FLAESALTSH LSALTIRESK DNAVDACGSL VADDLNDTDS 1020 AQLAGDDYHT ESLKGSLSAV RKSTQAAARI FQAFRVESFH RKKVVEYGDD DCGLSDERTL 1080 SLVSLKNVKA GQHDTHLHSA AVRIQNKFRG WKGRKEFMII RQRIVKLQAH VRGHQVRKNY 1140 RKVVWSVGIV EKVILRWRRK RTGLRGFRPD KQLEGSSEIQ PAKAEDDYDF LHDGRKQAEA 1200 RLQRALARVH SMSQYPEARE QYNRLTTCVA EMKQARIMQD EMLNESAVPD GNDFMAGLED 1260 LICRDDAAMS AIW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462933854 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316757.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | C5WXQ8 | 0.0 | C5WXQ8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g033650.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein |