PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462933161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 514aa MW: 57428.6 Da PI: 5.6002 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 438 | 489 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +g+++AeIrd se ++ r +lg+f+taeeAa+a++ a+ +++ 462933161 438 TKYLGVRRHP-SGKFAAEIRDSSE--QSVRRWLGTFDTAEEAARAYDLAAYAMRS 489 699*******.7*********644..369***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 1.38E-22 | 48 | 250 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.9E-7 | 66 | 207 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.7E-14 | 69 | 201 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 5.5E-8 | 75 | 90 | No hit | No description |
PRINTS | PR00364 | 5.5E-8 | 148 | 162 | No hit | No description |
SuperFamily | SSF52058 | 3.4E-8 | 244 | 384 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 9.1E-5 | 264 | 381 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 5.5E-8 | 322 | 338 | No hit | No description |
Pfam | PF00847 | 1.4E-11 | 438 | 490 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.18E-26 | 438 | 497 | No hit | No description |
PROSITE profile | PS51032 | 21.074 | 439 | 497 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-19 | 439 | 498 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-28 | 439 | 503 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-25 | 439 | 497 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 440 | 451 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-6 | 463 | 479 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MYLEITKVNT HDHKRIPEDI SPLHDMEIEG EDGKHGEVTE CVDNEHGGII GRVTDKHEIM 60 RLMMSCDPSN MRFTIVCIIG AEGLGKTTLA SLVYMDDTMR RSFEARAWMC LSDVCDYEGF 120 LRSVVESLIG VSCRLNERYE LEEVLKEELM GKKLLFVLDN LCENNVEVCK QMLPLLSIGD 180 KGSAVIVTTK SNIVAGNLGT AHAYNLKPFV HSSFLIKTKP NFVEYSPLGI VINKILSGCS 240 GFPMFAKSLN NVENAEDAKG ACLAAKKLKK LSLEWCHSED IESDDCISVA EHVLKLNLPG 300 LRSLQRLKIG NLGQRTCFAF LFELSSLLIL EFISCEHLSS VEGLSQLQSL KHLKFRTCPR 360 LNFIQDEPLP DTLETVDIHS NCYALSNWVP NEFELPDASE VYRKFIKRKC EAKGADDAVM 420 HDSTMEGGGW DDQGSSGTKY LGVRRHPSGK FAAEIRDSSE QSVRRWLGTF DTAEEAARAY 480 DLAAYAMRSH LAMLNFPGEV HNYVRGSSSS SYPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-24 | 432 | 507 | 2 | 79 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462933161 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN672670 | 1e-112 | JN672670.1 Eragrostis tef bio-material GRIN PI524434 clone Tefdw3b, complete sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 4e-16 | ERF family protein |