PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462933071

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 574aa MW: 62284 Da PI: 6.8177

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462933071	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	52	73	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ 462933071 52 ACPRCGKRYAVQADLKAHAKTC 73 6******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	39	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.37E-5	46	95	No hit	No description
PROSITE profile	PS50157	8.663	51	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
LRQRGPGAAP PRRRVYVCPE PGCVHHSPAR ALGDLTGIKK HFCRKHGEKR WACPRCGKRY 60 AVQADLKAHA KTCGTREYRC DCGTLFTRRD SFVTHRAFCG ALVEETGRVL AVPAPPSPRP 120 PDLEAEENAD RDKEKLEDED NENSGVAEME QPPRVVDAVA EKPQHVPSPP PLPQEPRRSL 180 SPPSLPQEPQ PLRSRAPLPQ EPQPLRSRPP FPQEQQPVVA LVPNVDEPKV VAEPIVLAKQ 240 EEEADQDEVT CFQEAGRYKD AEIESSNLLD KDTPMLPCFL PSPSEAIGTD ISSTTCGAGG 300 SVSNSIAPST TTNTFAGLFA SATKSTTSQS RSLRDLIGVD PTFLCLAIGT PSPLFPQTNA 360 SNPCSFAPPP APHMSATALL QKAAEVGASQ SSSSFLKEFG LGSSSSSSLP SKVPQGRFAD 420 NNTQQWYHQS NTQMEMEHHR RNQQMEMEHH RSNQQMEMEH RRSNQHMEVE RHRSNQQMGM 480 EPRPMLSSSL GLGLAYQSGN SGLPDLMMGS SPLFGPKPAT LDFLGLGIGG TMGGSTANGG 540 LPALMVRGEL DMGSAQAAAP WEDGKRKTNG RTIL

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

LRQRGPGAAP PRRRVYVCPE PGCVHHSPAR ALGDLTGIKK HFCRKHGEKR WACPRCGKRY  60
AVQADLKAHA KTCGTREYRC DCGTLFTRRD SFVTHRAFCG ALVEETGRVL AVPAPPSPRP  120
PDLEAEENAD RDKEKLEDED NENSGVAEME QPPRVVDAVA EKPQHVPSPP PLPQEPRRSL  180
SPPSLPQEPQ PLRSRAPLPQ EPQPLRSRPP FPQEQQPVVA LVPNVDEPKV VAEPIVLAKQ  240
EEEADQDEVT CFQEAGRYKD AEIESSNLLD KDTPMLPCFL PSPSEAIGTD ISSTTCGAGG  300
SVSNSIAPST TTNTFAGLFA SATKSTTSQS RSLRDLIGVD PTFLCLAIGT PSPLFPQTNA  360
SNPCSFAPPP APHMSATALL QKAAEVGASQ SSSSFLKEFG LGSSSSSSLP SKVPQGRFAD  420
NNTQQWYHQS NTQMEMEHHR RNQQMEMEHH RSNQQMEMEH RRSNQHMEVE RHRSNQQMGM  480
EPRPMLSSSL GLGLAYQSGN SGLPDLMMGS SPLFGPKPAT LDFLGLGIGG TMGGSTANGG  540
LPALMVRGEL DMGSAQAAAP WEDGKRKTNG RTIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-29	47	109	3	65	Zinc finger protein JACKDAW
5b3h_F	1e-29	47	109	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462933071

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802400.1	0.0	protein indeterminate-domain 1-like
TrEMBL	A0A2T7EXX2	0.0	A0A2T7EXX2_9POAL; Uncharacterized protein
STRING	LPERR07G17330.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11829	28	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-53	C2H2 family protein