PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462932636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 647aa MW: 71792.8 Da PI: 6.0679 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.7e-09 | 407 | 444 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + 462932636 407 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444 665559******************************88 PP | |||||||
2 | BELL | 119.1 | 2e-38 | 270 | 341 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+qtv+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi 462932636 270 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQTVVSSFDVVAGPGAAKPYTAVALHTISRHFRCLKDAINDQI 341 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.1E-58 | 194 | 339 | IPR006563 | POX domain |
Pfam | PF07526 | 3.3E-51 | 200 | 337 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.325 | 385 | 448 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-9 | 388 | 452 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-12 | 388 | 449 | No hit | No description |
SuperFamily | SSF46689 | 2.82E-17 | 389 | 454 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-28 | 391 | 454 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 405 | 444 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MATYYSSPGT ERDSQNMYSR DPGGASYPMP SALGNLLYLN NPTSGPYTEF SGILQSQQNC 60 MEIPDPGHPS VMSQDSSARE SDMLGSHQGQ HSFNSVKDMK NEMLMHMMDG SQSSTANLIH 120 DDAHNGAQLE FGVLNNHSPS NVHSVQGQGL SLSLNTQILA PSLPYWSIKP DMLSPQSYHD 180 SLRVDDIRMK SMQSEASRAI RNSRYLKAAQ ELLDEVVNVW KNIKQKAQKE QGDAGKADGK 240 ENEGGPKSEG VSSNPQESAA NTAPELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ 300 TVVSSFDVVA GPGAAKPYTA VALHTISRHF RCLKDAINDQ INVIRRKLGE EENSSGKEGK 360 LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT ILRAWLFEHF LHPYPKDSEK 420 LMLARQTGLT RSQISNWFIN ARVRLWKPMI EDMYKEEIGD IEQDSNSSSD NAPRSKAEVA 480 SSEDKEGLKS STPRVCETSQ LSESRASIGT VNVGGAPVGF QNEANPDESF MNLMLKDQRS 540 NDTDGGLLLH NAVAHHPDEN ARFMAYHLAE LGRYGNGNVS LTLGLQHSSS SLSVPNAQQS 600 FPGVGDDIYN ATAPLGASVA SSDYESMNQM DQRQRFEQSP LLHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 5e-16 | 394 | 451 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 394 | 451 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462932636 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963319.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963320.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963321.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | K3Z4G8 | 0.0 | K3Z4G8_SETIT; Uncharacterized protein | ||||
STRING | Si021437m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-113 | BEL1-like homeodomain 6 |