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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462932550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 24567.8 Da PI: 5.7156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00067 | 172 | 193 | 33 | 54 |
.TTS-STCHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksL 54 ++++K++ a++L +A++Y+k L 462932550 172 PGGTKMDTASMLDEAIHYVKFL 193 5789****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.89E-5 | 169 | 198 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-7 | 169 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-6 | 169 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEFDLLNSCP EAQLELMKTM LQLEQLTALD PSLMSPISPP ISPVQTPPAH QQSHCFSSPP 60 PYTSPTTIST GYDHQDGQYA APAAYPFPGP EHPHDFYALS PGAVAVDAAL LLGSGSSSPS 120 SSSAADAIRE VIFHIAALQP VDDQLLVDPE ASRPPKRRNV RISKDPQSRL VPGGTKMDTA 180 SMLDEAIHYV KFLKSQVQSL ERAAALGAAY HPALHAPWQY AAAALPHGGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | RPPKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462932550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092208 | 8e-46 | FP092208.1 Phyllostachys edulis cDNA clone: bphyem204g02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957004.1 | 9e-76 | transcription factor bHLH69 | ||||
TrEMBL | A0A3L6T9V0 | 4e-81 | A0A3L6T9V0_PANMI; Transcription factor bHLH69-like | ||||
STRING | Si030966m | 3e-75 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 2e-31 | bHLH family protein |