PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932433
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 322aa    MW: 34289.8 Da    PI: 4.9512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932433genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.88.9e-06296317122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                ++C+ C+k+F++   L++H++ 
  462932433 296 HSCKSCSKTFNSAVALESHQKA 317
                79******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-7284320No hitNo description
PROSITE profilePS5015710.658296322IPR007087Zinc finger, C2H2
PfamPF128744.5E-4297320No hitNo description
PROSITE patternPS000280298320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
LIPNSTPPLN PKAHHAPTTL GFCAAAPPLP RATAMEFWGE EVKPGMAVAC EAGDGFVIHL  60
SQAALGETKK GSENVVVYVK VGEKKLVIAT LSADKHPQMS CDLIFDEAFE LSHSSKTTSV  120
FLCAEELEND EIPLQNNENG KSAAKLPAKV GNKDKEDDDE ESDDSDSGSD DLNSDSDSED  180
DSMSEDDSSD DSEEDEDEDE ETPVKPVVGK KRAAETSLKT PASDKKAKLT TPKKETGDKK  240
GVHVATPHPA KQASKTPTDS KQKGPKTPAD SKPKEKAPKT PADSKAKEKS PKSGSHSCKS  300
CSKTFNSAVA LESHQKAKKH DA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932433
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682081.13e-83histone deacetylase HDT2 isoform X1
TrEMBLA0A0A9EU222e-94A0A0A9EU22_ARUDO; Hda106
STRINGSi004270m9e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-24histone deacetylase 3