PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462932193

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 619aa MW: 67974.5 Da PI: 10.1396

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462932193	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.6	1.7e-07	118	160	52	90
FAR1 52 rrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 ++ + C+a+++v ++ +gkw+v+kl+ eHnHel+ 462932193 118 QEDASAAGERCRAMMEVVATDgaggKGKWKVSKLVVEHNHELQ 160 4555666789****99988888999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-4	118	160	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS51152	8.784	324	384	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MAVSAAWTRR LLSCHRSPTG QTPSPPLPPP AAAKARRLLP TPDLVSPPTS DRYVNPTTSS 60 SPPALPRENQ RHLKSRPNPS LPFPPHGRRR EPGPEASAGP AEPPEPSNSI QAGPGDEQED 120 ASAAGERCRA MMEVVATDGA GGKGKWKVSK LVVEHNHELQ VAPGEVAATV PALGMEFDSV 180 EDAKGFYCGK GKDSDEGKEL VEVDEGVAAT AGKRKREPYK TRSRKPVTKN SEVIEVENGP 240 GMADAGNGKG SRRGRSKKGL LEKDGEPVGM DMAHDGTADD EEEDEGEGGE DGVDGEVQVV 300 VKEKRGRGRP RKNVTDDDAL QARVLRELGL RASQYDSNER KKILSKYLSK RQSRPASGRP 360 TKIASRQALA ERRKRGDGGR FLASEGHQPS QQPSERRSKR LERQNLKKEE KLLEQVEVLL 420 QAKLHDKSSL STILKGHQQN LLQNEVSNSE PRRATSKKNK NVEVRRQQQS SLDANKKKKG 480 RQGLPEPEEM EIPLRVDPPT VSNDIPTHLR NPTNQFLAPS HIMQAPYVTQ QFGLGSLQGF 540 PGMSPFGQNQ HLGLFNNRLT YNHHLFIVVH KSPRPHLRTY NPCSSSAAIL NWATKPRIKA 600 NTPFLSGISC DVYMCCRLK

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MAVSAAWTRR LLSCHRSPTG QTPSPPLPPP AAAKARRLLP TPDLVSPPTS DRYVNPTTSS  60
SPPALPRENQ RHLKSRPNPS LPFPPHGRRR EPGPEASAGP AEPPEPSNSI QAGPGDEQED  120
ASAAGERCRA MMEVVATDGA GGKGKWKVSK LVVEHNHELQ VAPGEVAATV PALGMEFDSV  180
EDAKGFYCGK GKDSDEGKEL VEVDEGVAAT AGKRKREPYK TRSRKPVTKN SEVIEVENGP  240
GMADAGNGKG SRRGRSKKGL LEKDGEPVGM DMAHDGTADD EEEDEGEGGE DGVDGEVQVV  300
VKEKRGRGRP RKNVTDDDAL QARVLRELGL RASQYDSNER KKILSKYLSK RQSRPASGRP  360
TKIASRQALA ERRKRGDGGR FLASEGHQPS QQPSERRSKR LERQNLKKEE KLLEQVEVLL  420
QAKLHDKSSL STILKGHQQN LLQNEVSNSE PRRATSKKNK NVEVRRQQQS SLDANKKKKG  480
RQGLPEPEEM EIPLRVDPPT VSNDIPTHLR NPTNQFLAPS HIMQAPYVTQ QFGLGSLQGF  540
PGMSPFGQNQ HLGLFNNRLT YNHHLFIVVH KSPRPHLRTY NPCSSSAAIL NWATKPRIKA  600
NTPFLSGISC DVYMCCRLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	311	KRGRGRPRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462932193

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981561.4	4e-99	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3L6TUH1	3e-95	A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	Sb01g006380.1	2e-95	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18