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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
462932100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family |
M-type_MADS |
Protein Properties |
Length: 69aa MW: 7841.19 Da PI: 10.5637 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
462932100 | genome | Tef | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98 | 3.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+
462932100 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59
79***********************************************96 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-21 | 1 | 63 | 1 | 63 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ512359 | 2e-77 | DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds. |
GenBank | DQ512362 | 2e-77 | DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds. |
GenBank | DQ534491 | 2e-77 | DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds. |
GenBank | EU946187 | 2e-77 | EU946187.1 Zea mays clone 300112 mRNA sequence. |
GenBank | KJ002714 | 2e-77 | KJ002714.1 Phyllostachys edulis MADS-box protein 5 mRNA, complete cds. |