PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462932100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 69aa    MW: 7841.19 Da    PI: 10.5637
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462932100genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.8e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+
  462932100  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59
               79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
CDDcd002652.69E-38263No hitNo description
SuperFamilySSF554554.71E-30262IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTS  60
SCNFSDLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-21163163Myocyte-specific enhancer factor 2B
1tqe_Q6e-21163163Myocyte-specific enhancer factor 2B
1tqe_R6e-21163163Myocyte-specific enhancer factor 2B
1tqe_S6e-21163163Myocyte-specific enhancer factor 2B
6c9l_A6e-21163163Myocyte-specific enhancer factor 2B
6c9l_B6e-21163163Myocyte-specific enhancer factor 2B
6c9l_C6e-21163163Myocyte-specific enhancer factor 2B
6c9l_D6e-21163163Myocyte-specific enhancer factor 2B
6c9l_E6e-21163163Myocyte-specific enhancer factor 2B
6c9l_F6e-21163163Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462932100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123592e-77DQ512359.1 Triticum aestivum MADS-box transcription factor TaAGL8 (AGL8) mRNA, complete cds.
GenBankDQ5123622e-77DQ512362.1 Triticum aestivum MADS-box transcription factor TaAGL5 (AGL5) mRNA, complete cds.
GenBankDQ5344912e-77DQ534491.1 Triticum aestivum MADS3 mRNA, complete cds.
GenBankEU9461872e-77EU946187.1 Zea mays clone 300112 mRNA sequence.
GenBankKJ0027142e-77KJ002714.1 Phyllostachys edulis MADS-box protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811305.18e-37MADS-box transcription factor 5-like
SwissprotA2Y9P01e-37MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-37MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A3Q8B9J51e-35A0A3Q8B9J5_DENLA; MADS5
TrEMBLQ6J5551e-35Q6J555_DENLA; MADS16 protein
TrEMBLX2FD641e-35X2FD64_9POAL; MADS-box protein 5
STRINGBRADI1G48520.14e-36(Brachypodium distachyon)
STRINGPavir.J35684.1.p7e-37(Panicum virgatum)
STRINGSi007226m4e-36(Setaria italica)
STRINGSb10g004390.14e-36(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-34MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]