PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462931889
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 601aa    MW: 67422.6 Da    PI: 9.4665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462931889genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.1e-111502024399
                S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                g++W v++   + +++ +l++GW +F  a+g+ +g fvv++++g  ++ l+vk+f++
  462931889 150 GKVWCVEV--GRDGDGAFLGRGWAKFLAAHGIGVGWFVVLRHEG--GGALTVKAFDT 202
                99******..999999*************************765..7778***9997 PP
2B341.91.7e-132403201397
                TT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  13 sgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +  +++p kf++++   g+   +s++++l ++ g+  +++l  +k++++++l++GW +F   +g++egD+++++++g++ f  ++kvf
  462931889 240 E-KMIIPGKFLKHYvseGY--LNSRMVVLVSPLGKFCRIEL--EKNQSGMFLAGGWTQFLAFHGICEGDVLLLRHEGNMVF--KFKVF 320
                3.49*******99997533..47889***************..***99****************************99999..55554 PP
3B352.59e-17396483193
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                ++k++++ ++l++ +l+l+ kf+ + g + ++++tl+ e es +sW v+     + +  y+l++GW  F+++n++  gD+++F ++g   ++l+
  462931889 396 WIKKEITLYMLQR-LLSLSVKFCHSVGFQAACPITLKTEMESTKSWHVRG--LAYEKVcYLLGEGWVTFCQDNKITKGDICTFNVMG---TTLW 483
                78999999*9998.5********999************************..6666556*************************655...4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.046114203IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-11148205IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-8150202IPR003340B3 DNA binding domain
CDDcd100172.19E-7150201No hitNo description
PROSITE profilePS508639.361150203IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-10150204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-16227323IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.475227323IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-16228323IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-13228320No hitNo description
SMARTSM010191.1E-6230323IPR003340B3 DNA binding domain
PfamPF023623.0E-10239319IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-14393491IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-12397487IPR003340B3 DNA binding domain
SMARTSM010190.0033397491IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-14400490IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-7410475No hitNo description
PROSITE profilePS5086310.292428491IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-5558590IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.456565601IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-4566590IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MSVGTGELVV ELDGAPGCRQ HGSSIDELGR GRRARLEERG RRGWEENERS QCLLKGTSVI  60
SPTHSKENAR FRVDISDTRN FQWSFDAIEP RPSSLSPVAM APSGDPVAVV RAKQLKVLMP  120
PSFHQLRISD ELAGCSTPPP AKGPRPYPFG KVWCVEVGRD GDGAFLGRGW AKFLAAHGIG  180
VGWFVVLRHE GGGALTVKAF DTSFCIKEFG APAAVMAPRN SKEVSYKPQF IRITHQDFME  240
KMIIPGKFLK HYVSEGYLNS RMVVLVSPLG KFCRIELEKN QSGMFLAGGW TQFLAFHGIC  300
EGDVLLLRHE GNMVFKFKVF GLDGGQKYLK NRDTEILQSE QINTLKQHES PCPMRKLGSN  360
SERSSYEGKK RPKSSMTTLN KTPRKESDYH IGPPSWIKKE ITLYMLQRLL SLSVKFCHSV  420
GFQAACPITL KTEMESTKSW HVRGLAYEKV CYLLGEGWVT FCQDNKITKG DICTFNVMGT  480
TLWHVIITRY SQEEKESPCS FSREGESKNG MPISGGDNQP KGSMSVLNKA SSTYTKSIYE  540
IGPPSWIQKK ITPNSLKQYH LVCGLMKKDD SYYLGSGWKK FVEEHKLKVY IELTLEPQLY  600
V
Cis-element ? help Back to Top
SourceLink
PlantRegMap462931889
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825232.10.0LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS751e-109Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A1E5W9E30.0A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGPavir.Gb02310.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-11B3 family protein