PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462931646

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 324aa MW: 35217.1 Da PI: 8.9781

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462931646	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.7e-20	211	296	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY++YA+++GFs+++++sk + ++++ t+ Cs++gk+++++k+ + +++++ r++C ak++ + d+k++vt+l leHnH+l+p 462931646 211 FYKRYARKTGFSITRRSSKIE--ENKVRYFTLACSRQGKAQNNSKN---KWKKNSSGRVQCPAKINFCILDhDSKFRVTSLTLEHNHDLCP 296 9************998887..56699**********9999...99999********987777***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	211	296	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MQLAAVQMEE RLVSLLPLNR FNGLKSFASD CGVVKLKLGL LRSAVCSSLR CTRRAPTTHT 60 AAAPLPAPPR THLPGAPLSP GGAFELLLGS PIPGSLAEIA PPVSDSCGRT NPAACQFIPC 120 RAEAAQPGTV SAAAGCDCVS KLRHQLVMEA NESVDAAKEN NADQQALPDE DDFVIEEVPT 180 DSDDEAAEKG AALIEPKRDM IFRSENDAVA FYKRYARKTG FSITRRSSKI EENKVRYFTL 240 ACSRQGKAQN NSKNKWKKNS SGRVQCPAKI NFCILDHDSK FRVTSLTLEH NHDLCPNEKK 300 IIVSQKKPGS CVKRSRRASN GRSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462931646

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310203.1	7e-40	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1B6Q8X1	2e-38	A0A1B6Q8X1_SORBI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	4e-08	FAR1-related sequence 2