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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462930537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 24246.2 Da PI: 8.6556 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.9 | 3.8e-18 | 131 | 209 | 7 | 90 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 p+d++++ + lp f++++g++ ++ +++l++ +s+ sW+v++ ++++ y l++GWk+F+++n++kegD+++Fk ++ + 462930537 131 PPDSMEK--MALPMAFCKAIGLPD-QTCMIMLKTtlSSSDSWQVRV--LPYKNTsYQLGSGWKSFCRENKIKEGDVCTFKIVE---T 209 6666665..79*********8875.55688888855677*******..444444499***********************654...3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.33 | 4 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-9 | 34 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-8 | 38 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.641 | 45 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-19 | 121 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 123 | 220 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.85E-16 | 124 | 205 | No hit | No description |
SuperFamily | SSF101936 | 1.29E-18 | 124 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-9 | 125 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-16 | 131 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSSASGSHCP TSRKNLRVLL PFSCRGLLAD DVGAGEALIV GPFAKVWPVE VARDGDGAFM 60 GRGWSEYAAA CGVGAGWLVI LRHRGRGVLT AKAFDASCSI RELGTPIPHP VEAAMSSKDA 120 PLKPQFICVL PPDSMEKMAL PMAFCKAIGL PDQTCMIMLK TTLSSSDSWQ VRVLPYKNTS 180 YQLGSGWKSF CRENKIKEGD VCTFKIVETR LWHVVVERQQ ALT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462930537 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684232.1 | 3e-48 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A0A9S193 | 7e-52 | A0A0A9S193_ARUDO; Uncharacterized protein | ||||
STRING | Si012530m | 9e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 5e-13 | B3 family protein |