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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462930534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 178aa MW: 20243.6 Da PI: 8.6196 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3e-16 | 10 | 78 | 17 | 86 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +l + f++++g+ k++++ l+ s r W+v+ r + ++y+++ GWk+F+++n LkegD+++F +++ 462930534 10 SLARAFCDAIGLLKPCTIILKTSVDSTRYWQVQGA-RYNNSSYTIQLGWKRFCQENSLKEGDICTFNVIE 78 6899*******9999976666666788*******3.333345************************9775 PP | |||||||
2 | B3 | 49.6 | 6.9e-16 | 97 | 171 | 15 | 93 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +lp f++ +g+ +++ +tl+ +s sW ++ k+ ++ + ++GWk+F+++n+LkegD+++F+++ e++l+ 462930534 97 SYSLPLAFCAGIGLREPCRITLKTSMSSCMSWLARVAPYKY-CSQMGGSGWKRFCQDNDLKEGDVCTFHVT---ETTLW 171 568************99998888777888*******65555.45689**********************53...33344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.182 | 1 | 90 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.013 | 3 | 90 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 10 | 84 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-15 | 11 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-16 | 11 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.75E-9 | 13 | 74 | No hit | No description |
SMART | SM01019 | 0.031 | 93 | 178 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-14 | 94 | 175 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-15 | 96 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-16 | 96 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-10 | 99 | 177 | No hit | No description |
PROSITE profile | PS50863 | 10.574 | 100 | 178 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MVIGASIGES LARAFCDAIG LLKPCTIILK TSVDSTRYWQ VQGARYNNSS YTIQLGWKRF 60 CQENSLKEGD ICTFNVIETT LWHVVIMRCK EKINQFSYSL PLAFCAGIGL REPCRITLKT 120 SMSSCMSWLA RVAPYKYCSQ MGGSGWKRFC QDNDLKEGDV CTFHVTETTL WHVIIVRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462930534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825227.1 | 4e-48 | putative B3 domain-containing protein Os04g0347400 | ||||
Refseq | XP_025826333.1 | 1e-49 | putative B3 domain-containing protein Os04g0346900 | ||||
TrEMBL | A0A3L6Q5T3 | 7e-55 | A0A3L6Q5T3_PANMI; Putative B3 domain-containing protein | ||||
STRING | Pavir.Ga02464.1.p | 7e-53 | (Panicum virgatum) | ||||
STRING | Pavir.J14487.1.p | 1e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-10 | B3 family protein |