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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
462929323 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family |
FAR1 |
Protein Properties |
Length: 444aa MW: 50137.3 Da PI: 9.5444 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
462929323 | genome | Tef | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 54.8 | 3.2e-17 | 11 | 106 | 1 | 85 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85
+fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + +++t++ H
462929323 11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeagagagtsSSPVPPRCPDSRTGCLASLTIKLVPsANAFRITDFCPSH 106
6*****************99997666.****************9999888888877644444458899**************98999*****99888 PP
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2 | FAR1 | 70.4 | 4.2e-22 | 137 | 236 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k+ eHnH+
462929323 137 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgittgstnggtglSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKFFPEHNHP 234
9*************9976665..999****************9999********999987888888999******************************* PP
FAR1 89 la 90
la
462929323 235 LA 236
97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 444 aa
Download sequence Send
to blast |
MYFETEDDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPQDEA 60 GAGAGTSSSP VPPRCPDSRT GCLASLTIKL VPSANAFRIT DFCPSHHSIA TMASLPDPKD 120 GPYPDMHFET EEDAYVFYNR YAEHVGFSVR RSYKKRKRGV IVSRIFVCSR EGVSDRAKQE 180 GITTGSTNGG TGLSGTPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFFPE HNHPLANPDN 240 RTMFSADILT TLRKDNLIND LKKELSEQED ILQFLRRYEA ILEEHRSKKL HADVDSSQVT 300 LPIPSLRMLK QASSAYTPEA FKAIPRWEIM LLLQAVKQFL LEETNILTIQ HKQEELLRQQ 360 TLHLNPRIIC GPSCPILRYC ACGYEPILGT IMRSSVAKQH PYGQRTTWRG DSSPYSTMSS 420 AQKLACEVHS LHPTIDRIGV IYSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK119387 | 1e-70 | AK119387.1 Oryza sativa Japonica Group cDNA clone:001-132-C03, full insert sequence. |
GenBank | AP003956 | 1e-70 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. |
GenBank | AP004259 | 1e-70 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. |
GenBank | AP014963 | 1e-70 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
GenBank | CP012615 | 1e-70 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |