PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928923
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 1017aa    MW: 120000 Da    PI: 9.4944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928923genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10108132327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 108 KAECQFYMKTRDCKFGGLCKFHHPK 132
                579********************96 PP
2zf-CCCH31.62.7e-10252276327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 252 KAECQFYMKTRDCKFGGLCKFHHPK 276
                579********************96 PP
3zf-CCCH31.62.7e-10396420327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 396 KAECQFYMKTRDCKFGGLCKFHHPK 420
                579********************96 PP
4zf-CCCH31.62.7e-10540564327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 540 KAECQFYMKTRDCKFGGLCKFHHPK 564
                579********************96 PP
5zf-CCCH31.62.7e-10684708327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 684 KAECQFYMKTRDCKFGGLCKFHHPK 708
                579********************96 PP
6zf-CCCH31.62.7e-10828852327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 828 KAECQFYMKTRDCKFGGLCKFHHPK 852
                579********************96 PP
7zf-CCCH31.62.7e-10954978327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C+f+++t  Ck+G+ CkF+H++
  462928923 954 KAECQFYMKTRDCKFGGLCKFHHPK 978
                579********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.512105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084106132IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8108132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512249277IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084250276IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8252276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512393421IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084394420IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8396420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512537565IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084538564IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8540564IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512681709IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084682708IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8684708IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512825853IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084826852IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8828852IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.512951979IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084952978IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8954978IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.0669971017IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MYNLASSLTS EVPTARRVLA HVPSHPDCVS PKYPVNVAGE CIPKQTHKPE CQLLEINHRI  60
RILFRPHIWP SDSNPSRTLI TFGRECHLII PLLFEVQREN VFLNRRDKAE CQFYMKTRDC  120
KFGGLCKFHH PKDRAVPVSN FALSSVELPI RPREPICTFY SRYGIMVQNE NFIIQCKSSC  180
TALLHHQPVR SQLLDVCWHM YHRIRILFRP HIWPSDSNPS RTLITFGREC HLIIPLLFEV  240
QRENVFLNRR DKAECQFYMK TRDCKFGGLC KFHHPKDRAV PVSNFALSSV ELPIRPREPI  300
CTFYSRYGIM VQNENFIIQC KSSCTALLHH QPVRSQLLDV CWHMYHRIRI LFRPHIWPSD  360
SNPSRTLITF GRECHLIIPL LFEVQRENVF LNRRDKAECQ FYMKTRDCKF GGLCKFHHPK  420
DRAVPVSNFA LSSVELPIRP REPICTFYSR YGIMVQNENF IIQCKSSCTA LLHHQPVRSQ  480
LLDVCWHMYH RIRILFRPHI WPSDSNPSRT LITFGRECHL IIPLLFEVQR ENVFLNRRDK  540
AECQFYMKTR DCKFGGLCKF HHPKDRAVPV SNFALSSVEL PIRPREPICT FYSRYGIMVQ  600
NENFIIQCKS SCTALLHHQP VRSQLLDVCW HMYHRIRILF RPHIWPSDSN PSRTLITFGR  660
ECHLIIPLLF EVQRENVFLN RRDKAECQFY MKTRDCKFGG LCKFHHPKDR AVPVSNFALS  720
SVELPIRPRE PICTFYSRYG IMVQNENFII QCKSSCTALL HHQPVRSQLL DVCWHMYHRI  780
RILFRPHIWP SDSNPSRTLI TFGRECHLII PLLFEVQREN VFLNRRDKAE CQFYMKTRDC  840
KFGGLCKFHH PKDRAVPVSN FALSSVELPL RPRESICTFY SRYGIMVQNE NFIIQCKSSC  900
TALLHHQPVR SQLLDVCWNM YHRLRIVFRP HIRPSDSNPS NTIRENVFLN RRDKAECQFY  960
MKTRDCKFGG LCKFHHPKDR AVPVSNFALS SVELPIRPRE PICNFYSRYG MFKYGAK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.36e-41zinc finger nuclease 3