PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462928363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 406aa MW: 44321.2 Da PI: 8.5311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.9e-19 | 72 | 121 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g 462928363 72 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 121 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-22 | 72 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-38 | 72 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 72 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-33 | 72 | 130 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 72 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-12 | 73 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
TPTASATTRT TWSRRFRLRR RRGSSSAARP RRRPMLRSPQ LTTLDADDGI TPKPAQNDGP 60 VATSAKRSRK NQYRGIRQRP WGKWAAEIRD PSKGVRVWLG TYNTAEEAAR AYDAEARKIR 120 GKKAKVNFPD EVSNGQKSIL KPSAADPTKL TQPLKNCADE AFGHPTNGDN DLFAMFAFSD 180 NKVPLKPAET AGFLPPVKPL VPTEGFGTNM LSDQSSNSYG SSDFGWDDET MTSDYTSVFA 240 PNNAVPAYVE PACLQGGPSK RLRNNYGVAV PQGNGAPNLT QDMSGFVPEM KYLPLPYVES 300 SSEVSMDSLL QNDVTQDGAS NGDLWGLDEL LMAAGPLAVV KMKSQLCLLC SVAVRTIVML 360 DYMLLSVEFY DNVYSMLLCG VSMIGSMSET DSITTLAHIF AVLYCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 68 | 136 | 1 | 70 | ATERF1 |
3gcc_A | 2e-21 | 68 | 136 | 1 | 70 | ATERF1 |
5wx9_A | 5e-21 | 72 | 135 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462928363 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956913.1 | 1e-163 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0A9P810 | 1e-174 | A0A0A9P810_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J01991.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-27 | related to AP2 12 |