PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462928363
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 406aa    MW: 44321.2 Da    PI: 8.5311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462928363genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-1972121255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  462928363  72 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 121
                69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-2272131IPR016177DNA-binding domain
SMARTSM003803.2E-3872135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3272130IPR001471AP2/ERF domain
CDDcd000181.10E-3372130No hitNo description
PROSITE profilePS5103223.93372129IPR001471AP2/ERF domain
PfamPF008476.9E-1273121IPR001471AP2/ERF domain
PRINTSPR003672.8E-117384IPR001471AP2/ERF domain
PRINTSPR003672.8E-1195111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
TPTASATTRT TWSRRFRLRR RRGSSSAARP RRRPMLRSPQ LTTLDADDGI TPKPAQNDGP  60
VATSAKRSRK NQYRGIRQRP WGKWAAEIRD PSKGVRVWLG TYNTAEEAAR AYDAEARKIR  120
GKKAKVNFPD EVSNGQKSIL KPSAADPTKL TQPLKNCADE AFGHPTNGDN DLFAMFAFSD  180
NKVPLKPAET AGFLPPVKPL VPTEGFGTNM LSDQSSNSYG SSDFGWDDET MTSDYTSVFA  240
PNNAVPAYVE PACLQGGPSK RLRNNYGVAV PQGNGAPNLT QDMSGFVPEM KYLPLPYVES  300
SSEVSMDSLL QNDVTQDGAS NGDLWGLDEL LMAAGPLAVV KMKSQLCLLC SVAVRTIVML  360
DYMLLSVEFY DNVYSMLLCG VSMIGSMSET DSITTLAHIF AVLYCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2168136170ATERF1
3gcc_A2e-2168136170ATERF1
5wx9_A5e-21721351478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462928363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956913.11e-163ethylene-responsive transcription factor 1
TrEMBLA0A0A9P8101e-174A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-27related to AP2 12