PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

462927535

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 502aa MW: 54924.6 Da PI: 6.714

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462927535	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.1	1.6e-29	13	109	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaC rrkC++dCvlapyfp e+ +++a+v++++Ga+nv +ll++lp e+r +a+ +l++eA+a ++ Pvy +v+ i lqq l+q++a+la+ 462927535 13 ACAACMDRRRKCEPDCVLAPYFPPEHWERYAAVRRVYGADNVANLLAELPLEQRAHAAGTLIFEARAAIKYPVYRCVSYIVVLQQMLKQKQAQLAAE 109 7********************************************************************************************9875 PP
2	DUF260	109.9	1.9e-34	192	288	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk+ r kC+++Cvlapyfp e+ ++fa+vhk +Gasnv+kll++lp+e+r +a+++lv+eAea ++PvyG+v+ i +l+qql++++ la l 462927535 192 ACAACKHRRAKCQPSCVLAPYFPPEHGAQFAAVHKAYGASNVSKLLAELPREDRARAVETLVFEAEAYNKNPVYGCVAYIIALSQQLHESHGYLAGL 288 7**************************************************************************************9998877755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.731	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-29	13	108	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	21.969	191	292	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-34	192	285	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MSSGGSSSPP AAACAACMDR RRKCEPDCVL APYFPPEHWE RYAAVRRVYG ADNVANLLAE 60 LPLEQRAHAA GTLIFEARAA IKYPVYRCVS YIVVLQQMLK QKQAQLAAEM AEEVARVQHL 120 LAVQAQAEEE FARQQDERMR QALAAARERK NYPHQAQAGQ RWGTADAGTF VVQQQPQQPP 180 QPRARSMSEA PACAACKHRR AKCQPSCVLA PYFPPEHGAQ FAAVHKAYGA SNVSKLLAEL 240 PREDRARAVE TLVFEAEAYN KNPVYGCVAY IIALSQQLHE SHGYLAGLRG ELARSSGSAN 300 WAPPRRTRTA SASVQHLLAV QAQAEEEVER QQEERMRQAL ATARERIARE QQQQAAAMEI 360 DVTQPHLHQQ TVHQIANAQQ LSAAAGEVAR EQDMDLMMMM QQAAAYAQHG MPGNVSGATN 420 VAAFLPRGSS DAETFLLQHQ QQQPQMVNAH GFQTDASLPP PPLADLPRQQ QGDGGADDQF 480 SSDDLTAYFA IPGPNNPSDG SG

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MSSGGSSSPP AAACAACMDR RRKCEPDCVL APYFPPEHWE RYAAVRRVYG ADNVANLLAE  60
LPLEQRAHAA GTLIFEARAA IKYPVYRCVS YIVVLQQMLK QKQAQLAAEM AEEVARVQHL  120
LAVQAQAEEE FARQQDERMR QALAAARERK NYPHQAQAGQ RWGTADAGTF VVQQQPQQPP  180
QPRARSMSEA PACAACKHRR AKCQPSCVLA PYFPPEHGAQ FAAVHKAYGA SNVSKLLAEL  240
PREDRARAVE TLVFEAEAYN KNPVYGCVAY IIALSQQLHE SHGYLAGLRG ELARSSGSAN  300
WAPPRRTRTA SASVQHLLAV QAQAEEEVER QQEERMRQAL ATARERIARE QQQQAAAMEI  360
DVTQPHLHQQ TVHQIANAQQ LSAAAGEVAR EQDMDLMMMM QQAAAYAQHG MPGNVSGATN  420
VAAFLPRGSS DAETFLLQHQ QQQPQMVNAH GFQTDASLPP PPLADLPRQQ QGDGGADDQF  480
SSDDLTAYFA IPGPNNPSDG SG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-28	11	294	9	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-28	11	294	9	113	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462927535

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	4e-23	LOB domain-containing protein 23