PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462927109

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 426aa MW: 45731.3 Da PI: 8.0741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462927109	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.6e-40	98	158	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s 462927109 98 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 158 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	94	147	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	100	156	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	102	156	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	104	140	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MAECRAGAGG GDCLIKLFGK TIPVPELGAA AVVDVDKDLQ QSGSSTTEPK GQESTLQDST 60 GSPPQQGVTD TEDSSAEKNS SADQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY 120 NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAA SHFLQRVRAA LPMDPLCTSA 180 KTNGTVLSFG SDMSSLDLTE QMKHLKEKLV PITRIKNRDD QSVDSCAEGG SAKAEDSKPT 240 NQKEKVEADK SANVLQHPCM NGVTMWPLSC APPPACYAPG IAIPFYPAAA AYWGYMVPGA 300 WNTPWPPHSQ SESATSPSSA SPASTKSNCF TPGKRHRDGD EDGNGKVWVP KTIRIDDADE 360 VARSSILSLI GINGDKVRKD GRGCKLASVF EEKDDAKTAT HIINSLPFLR GNPAAISRSL 420 TFQEGS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MAECRAGAGG GDCLIKLFGK TIPVPELGAA AVVDVDKDLQ QSGSSTTEPK GQESTLQDST  60
GSPPQQGVTD TEDSSAEKNS SADQQGETAN QKEKLKKPDK ILPCPRCNSM DTKFCYYNNY  120
NINQPRHFCK NCQRYWTAGG AMRNVPVGAG RRKSKSASAA SHFLQRVRAA LPMDPLCTSA  180
KTNGTVLSFG SDMSSLDLTE QMKHLKEKLV PITRIKNRDD QSVDSCAEGG SAKAEDSKPT  240
NQKEKVEADK SANVLQHPCM NGVTMWPLSC APPPACYAPG IAIPFYPAAA AYWGYMVPGA  300
WNTPWPPHSQ SESATSPSSA SPASTKSNCF TPGKRHRDGD EDGNGKVWVP KTIRIDDADE  360
VARSSILSLI GINGDKVRKD GRGCKLASVF EEKDDAKTAT HIINSLPFLR GNPAAISRSL  420
TFQEGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462927109

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ260456	0.0	GQ260456.2 Eleusine coracana Dof-type zinc finger protein (DOF1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	C7EAG3	0.0	C7EAG3_ELECO; Dof-type zinc finger protein
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	9e-51	cycling DOF factor 2