PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926787
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 962aa    MW: 105584 Da    PI: 5.3157
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926787genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-182785357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  462926787 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
               5678****************************************************996 PP
2START111.11.7e-3519534528173
                CCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS
      START  28 engdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwv 124
                 +g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+  v+  g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v
  462926787 195 TPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTVLPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLV 293
                578999**************************7777777777.****************9999************************************* PP

                EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
      START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                ++++S++     p+    +++vRae+lpSg+l++p+++g s v++v+h dl+
  462926787 294 VCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGDSIVHIVDHLDLE 345
                *******9999999898899******************************95 PP
3START118.59.1e-3834649562205
                HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEE CS
      START  62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgilie 155
                v e+l+d++ W +++++ e+  v+  g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++
  462926787 346 VIEILKDRPSWFRDCRSLEVFTVLPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVR 445
                557888888****************9999********************************************9999999898899************** PP

                EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
      START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                p+++g s v++v+h dl++++++++lr+l++s+++ ++k+++ +l+++++
  462926787 446 PCDGGDSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLRQ 495
                *****************************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17885IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.3E-152490IPR001356Homeobox domain
SuperFamilySSF466891.11E-152688IPR009057Homeodomain-like
CDDcd000861.55E-152787No hitNo description
PfamPF000467.4E-162885IPR001356Homeobox domain
CDDcd146864.46E-679118No hitNo description
SuperFamilySSF559611.37E-28194345No hitNo description
PfamPF018525.7E-33195345IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-18207345IPR023393START-like domain
PROSITE profilePS5084819.825214345IPR002913START domain
SMARTSM002348.6E-23285496IPR002913START domain
PfamPF018522.8E-35346495IPR002913START domain
SuperFamilySSF559611.07E-25346498No hitNo description
Gene3DG3DSA:3.30.530.204.4E-17349470IPR023393START-like domain
PROSITE profilePS5084821.296353505IPR002913START domain
PfamPF086709.5E-50819961IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGFDKV PGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQSTSLANDT SCESNVTTPP NPMRDASNPS GLLSIAEETF TEDEGYMPTM  180
DFLILWLTYS LPLPTPGPDS VGIVAISHGC RGVAARACGL VNLEPTKVIE ILKDRPSWFR  240
DCRSLEVFTV LPAGNGGTIE LVYMQMYAPT TLVPARDFWT LRYTTTMEDG SLVVCERSLS  300
GSGGGPSAAS AQQFVRAEML PSGYLVRPCD GGDSIVHIVD HLDLEVIEIL KDRPSWFRDC  360
RSLEVFTVLP AGNGGTIELV YMQMYAPTTL VPARDFWTLR YTTTMEDGSL VVCERSLSGS  420
GGGPSAASAQ QFVRAEMLPS GYLVRPCDGG DSIVHIVDHL DLEAWSVPEV LRPLYESSRV  480
VAQKMTTVAL RHLRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSI  540
MGGDGIEDVV VACNSTKKIR NNSNAGITFG APGGIICAKA SMLLQSVPPA VLVRFLREHR  600
SEWADYNIDA YLASALKSSA CSLPGLRPMR FSGGQMILPL AHTVENEEIL EVVRLEGQSL  660
THDEALLSRD IHLLQLCTGI DEKSVGSSFQ LVFAPIDEHF PDDAPLISSG FRVIPLDMKT  720
DGVSSGRTLD LASSLDVGSA AAQASGDGSP DDCNLRSVLT IAFQFPYEMH LQDSVATMAR  780
QYVRSIVSAV QRVSMAISPS QSGLISGQRV LSGFPEAATL ARWVCQSYHY HLGVELLTQS  840
DEAGEALLKM LWHHPDAILC CSFKEKPMFT FANKAGLDML ETSLIALQDL TLDKIFDESG  900
RKALFSDISK LMEQGYVYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS  960
FV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926787
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105994.10.0rolled leaf 2
RefseqXP_008665074.10.0rolled leaf 2 isoform X2
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A1D6JKQ50.0A0A1D6JKQ5_MAIZE; Rolled leaf2
STRINGSb01g050000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein