PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926499
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 389aa    MW: 43483.5 Da    PI: 9.8286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926499genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.87.9e-13681323199
                .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 e+ t  + ++ g++W+v++   + +++ +l++GW eF  a+g+ +g fvv++++g  ++ l+vk+f++
  462926499  68 GEGATALVVSPFGKVWRVEV--GQDGDGAFLGRGWAEFLAAHGIGVGWFVVLRHEG--GGALTVKAFDT 132
                567789999***********..999999*************************765..7778***9997 PP
2B357.32.8e-18294384195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                ++k+++++++l++ +l+l ++f+ ++g+ +++ + ++l++   s +sW+v     kk+++y+l++GWk+Fv++n+Lk+gD+++F  ++   ++l++ 
  462926499 294 WIKKEITPYMLQR-LLCLARDFFYAIGLREPS-TLIKLKTsiNSAKSWQVCG-LMKKDNSYYLGSGWKKFVEENKLKVGDVCTFNIVE---ATLWHV 384
                78999******98.5********9**999765.699999954555*****98.5888899************************9654...344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1319134IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006123133IPR003340B3 DNA binding domain
PfamPF023621.7E-1065132IPR003340B3 DNA binding domain
CDDcd100171.10E-869131No hitNo description
SuperFamilySSF1019366.67E-1369135IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.60180133IPR003340B3 DNA binding domain
PfamPF023624.2E-14294388IPR003340B3 DNA binding domain
CDDcd100172.24E-10295374No hitNo description
SMARTSM010196.2E-6295389IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-16296388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-16296388IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.857327389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDQEAVVLCL DSRGQRQAGQ HAFRKNLRPS SLSPVAMAPS GDPVAVVRAK QLKRISDELA  60
GCFDTAAGEG ATALVVSPFG KVWRVEVGQD GDGAFLGRGW AEFLAAHGIG VGWFVVLRHE  120
GGGALTVKAF DTSFCIKEFG APAAVMAPRN SKEVSCKPQF IRVIHQDFME KMIIPAKFLK  180
HHYVSEGYLN SHMAVLVMFC EGDVLLLRHE GNMVFKFKVF GLDGGQKYLK NRDTEILQMT  240
DTLKKHESPC PMRKLGRNSE GSSYEGKKRP KSSMTTLNKT PWKESEYHIG PPSWIKKEIT  300
PYMLQRLLCL ARDFFYAIGL REPSTLIKLK TSINSAKSWQ VCGLMKKDNS YYLGSGWKKF  360
VEENKLKVGD VCTFNIVEAT LWHVVISRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462926499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825231.11e-135putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS744e-83Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A1E5W9E31e-136A0A1E5W9E3_9POAL; Putative B3 domain-containing protein
STRINGPavir.J00273.1.p1e-133(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-08B3 family protein