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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462926373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 150aa MW: 16652.5 Da PI: 9.0664 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 46.6 | 8.9e-15 | 41 | 70 | 48 | 77 |
SEEETTT--SS--S-STTTT-------S-- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 rfhe++efD+ek+sCr+rLa+hn+rrrk + 462926373 41 RFHEVDEFDDEKKSCRQRLADHNRRRRKLK 70 9**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.015 | 1 | 69 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.83E-11 | 41 | 72 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-9 | 41 | 68 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MKICLSLEYT RLRQSAPSHL VEPCQVQSSD FCFFGSTLSF RFHEVDEFDD EKKSCRQRLA 60 DHNRRRRKLK PSGTDIALKR RAHAKNSTTA EKEASSSKNI GTGDVLGTQE PWRGGARTGG 120 SQGESSDDAA STHPSTEHPA RLPSYVVACR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 68 | KKSCRQRLADHNRRRRKL |
2 | 63 | 80 | RRRRKLKPSGTDIALKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462926373 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634037.1 | 6e-18 | squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q01KM7 | 5e-19 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
STRING | OPUNC04G25460.1 | 1e-17 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 1e-10 | squamosa promoter binding protein-like 9 |