PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462926290

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 114aa MW: 12323.6 Da PI: 9.5191

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462926290	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.6e-16	41	108	17	85
E--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 17 vlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +lp +f+e++g+++++ ++l++ +s W+v++ + ks++++ ++GWk F+kan++++gD+++F + 462926290 41 SLPLTFCEAIGLQEACM--IILKTsiSSTIAWQVRV-VPYKSCAHMRQSGWKAFCKANKINVGDVCIFNAV 108 79*********9995..555553367799*.6888899**********************954 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.4E-14	40	111	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.76E-11	41	105	No hit	No description
SuperFamily	SSF101936	7.65E-13	41	110	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.0E-13	41	109	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.911	42	114	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MAFGSCYLGL RPPSSTSFLC ALRGGGLPSR ATVVRIAVAA SLPLTFCEAI GLQEACMIIL 60 KTSISSTIAW QVRVVPYKSC AHMRQSGWKA FCKANKINVG DVCIFNAVET KLWH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462926290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975298.1	8e-25	putative B3 domain-containing protein Os04g0347400 isoform X2
Refseq	XP_004975299.1	7e-25	putative B3 domain-containing protein Os04g0347400 isoform X3
Refseq	XP_022683932.1	8e-25	putative B3 domain-containing protein Os04g0347400 isoform X1
Refseq	XP_025826333.1	6e-25	putative B3 domain-containing protein Os04g0346900
TrEMBL	A0A2T8IBN6	1e-29	A0A2T8IBN6_9POAL; Uncharacterized protein
STRING	Pavir.Gb02050.1.p	1e-28	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP425	35	187