PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462926287 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 544aa MW: 61076.4 Da PI: 9.4988 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 318 | 388 | 15 | 86 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++lp++f++++g ++++ +tl+ s + W+v+ ++ + g+y l++GWk F+++ +L+egD++++ +++ 462926287 318 TMTLPRPFCNAIGFQEPCMITLQASMDSTKLWQVQG-HTYNTGSYQLGSGWKLFCRDTRLREGDILTINVIQ 388 689**********9999998888888999******9.6888889***********************98765 PP | |||||||
2 | B3 | 53.6 | 4e-17 | 447 | 528 | 2 | 85 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 +k+ ++ ++ + rl+lp f++++g+++++ + l++ + g rsW+v ++ +++r + t+GWk+F+++n+Lk+gD ++F + 462926287 447 VKKKINTSAIED-RLSLPAVFCDAIGLQETCL--INLKSsLCGaRSWQVCVS--PNKNRsHRVTAGWKRFCQENELKVGDACTFNIV 528 677777777765.6**************8885..6666633336*******4..444444999*********************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-12 | 138 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.064 | 138 | 234 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.11E-7 | 139 | 231 | No hit | No description |
SuperFamily | SSF101936 | 9.61E-15 | 139 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0017 | 141 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.24 | 311 | 401 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-13 | 313 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-13 | 315 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.18E-8 | 317 | 384 | No hit | No description |
Pfam | PF02362 | 1.4E-10 | 318 | 388 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 319 | 400 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-15 | 442 | 529 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.293 | 445 | 544 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 448 | 531 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0029 | 448 | 538 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-14 | 448 | 529 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.74E-11 | 456 | 525 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MASSGDPGAT AARKHLRVLL PFSRSSLVRE MFSRLRHAPK EAEPTDLARL QRIPDELAGE 60 IGGGEALVFV PSGGKRFWPV EVGQDDDGAF LGRGGQAFRV GRGVLTVKAF DDSGCVRKLG 120 APVPPPAEET VSSKARFKPQ FIRVFPQDSM EKMLLPAKFV QHYILKEHLN NCMAFIFVPL 180 GKICQIELKM NQSDMFFAGG WSQFLSFHNI TGPNTLLLRY EGSMVFTVKV FEPNGCLRGP 240 KHKDIRMQQT KLAESEQLPE TPPLSIQNHK SKHDWPSNEG EGQKKPKGSM TILKKRSKIY 300 CVYDIGPPAW MKKKVDFTMT LPRPFCNAIG FQEPCMITLQ ASMDSTKLWQ VQGHTYNTGS 360 YQLGSGWKLF CRDTRLREGD ILTINVIQTT LWQVVITRGK ENINQSYHAH ETPSNSRGEK 420 RPNYGSLTNL EHAKPRCIFE IGPPAWVKKK INTSAIEDRL SLPAVFCDAI GLQETCLINL 480 KSSLCGARSW QVCVSPNKNR SHRVTAGWKR FCQENELKVG DACTFNIVET RLWESSFDIV 540 AEMV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462926287 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825039.1 | 1e-158 | putative B3 domain-containing protein Os04g0347400 isoform X1 | ||||
TrEMBL | A0A0A9S193 | 1e-168 | A0A0A9S193_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Gb02050.1.p | 1e-163 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 6e-12 | B3 family protein |