PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925580
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 420aa    MW: 46439.9 Da    PI: 6.5573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925580genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10139187354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +++  rE++RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  462925580 139 TSKACREKQRRDKLNDRFVELGSTLEPG---KPVKADKAAILSDATRMVIQL 187
                67889**********************9...99*************988777 PP
2HLH31.72.8e-10264312354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +++  rE++RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  462925580 264 TSKACREKQRRDKLNDRFVELGSTLEPG---KPVKADKAAILSDATRMVIQL 312
                67889**********************9...99*************988777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-13134207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.557136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-7137192No hitNo description
PfamPF000101.1E-7139187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13139209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-13259332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.557261312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-7262317No hitNo description
PfamPF000101.1E-7264312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13264336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9267318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.64E-5330399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM0035317338390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-6352407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSLPPADGGG GGDDWFLDCG ILDDLPAAAC GAFPWDASPS SSNPRGCFCS IISEFCTLAR  60
CLLLVDEVVL MFPGPGYGGW NGWGLDYQSY GNENYEISIF WDVLLSVEVG NYVNTTDVFK  120
EPSSNKRLRP GSSGSGRPTS KACREKQRRD KLNDRFVELG STLEPGKPVK ADKAAILSDA  180
TRMVIQLRAE AQQLKDTNDS LEEKIKELKF LGIDSVNTAF CIAAMRIVPD YVEVGNYVNT  240
TDVFKEPSSN KRLRPGSSGS GRPTSKACRE KQRRDKLNDR FVELGSTLEP GKPVKADKAA  300
ILSDATRMVI QLRAEAQQLK DTNDSLEEKI KELKRVFHVV GPLFRLFIVS ARFVELGSTL  360
EPGKPVKADK AAILSDATRM VIQLRAEAQQ LKDTNDSLEE KIKELKAEKD ELREEKHKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972892.12e-63transcription factor ILR3
SwissprotQ9C6827e-31BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A0A9E9E68e-69A0A0A9E9E6_ARUDO; Uncharacterized protein
STRINGSi014339m8e-63(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-32bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]