PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925072
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 202aa    MW: 22507 Da    PI: 10.3574
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925072genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.2e-15121182162
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N+++ ++l++l++e + l++ 
  462925072 121 DKEHKRLKRLLRNRVSAQQARERKKAYLTDLEVKVKDLEKKNSEMEEKLSTLQNENQMLRQI 182
                5899*****************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000414.4E-54560IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.4E-5120136IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.1E-14121185IPR004827Basic-leucine zipper domain
PfamPF001705.6E-14122183IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.3123186IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-13125183No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-16125185No hitNo description
CDDcd147042.72E-16126177No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
PRINTSPR000414.4E-5138158IPR001630cAMP response element binding (CREB) protein
PRINTSPR000414.4E-5158175IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
LDHTCKQPGH HTRPAGDPGQ EKQSARRQIC WKNEQGKERM QEQAASSLPS SSERSSSSAH  60
HMEMELKEGM ESDEEIRRVP ELGLELPGGT STSGREAGSA DRAQASAAQA GGRRRVRSPA  120
DKEHKRLKRL LRNRVSAQQA RERKKAYLTD LEVKVKDLEK KNSEMEEKLS TLQNENQMLR  180
QILKNTTVSR RGPGSTASGD GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A3e-14146185342Transcription factor HY5
2oqq_B3e-14146185342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951525.15e-90transcription factor HY5
RefseqXP_025796807.15e-90transcription factor HY5-like
SwissprotQ9SM501e-55HY5_SOLLC; Transcription factor HY5
TrEMBLA0A2S3GME71e-88A0A2S3GME7_9POAL; Uncharacterized protein
TrEMBLK3YW781e-88K3YW78_SETIT; Uncharacterized protein
STRINGSi018524m2e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.15e-47bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]