PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462925057
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 499aa    MW: 55751.2 Da    PI: 10.1424
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462925057genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19171261199
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffk++ p++++++  l +p +f+ ++ +++   ++ ++++ +sg++W++ l  +   ++  +tkGWkeFv ++ L++g f+vF++dg+sef   v vf+k
  462925057 171 FFKIFFPHHSGER--LKIPQPFC-KYlKEE--ANRPVSMKGPSGNTWQLML--TSVEEGLGFTKGWKEFVGDHSLQQGHFLVFTYDGHSEF--SVVVFSK 261
                8999988887765..9*******.663544..4556***************..99999999*************************99999..8877776 PP
2B354.22.7e-17395485398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +v++ s+v     + +p +f++e+    ++sk++tl d++g+ Wev++ y  +s    +++GW +F+  n+L+e D+++F++ ++   + +v+++r
  462925057 395 QVMMASYVYLGLFMNIPSEFVREYLP--QTSKKMTLWDPQGKPWEVQYVYHERSV-AAFSGGWGKFAVGNNLEEFDVCLFEFLKE--DNIKVHIYR 485
                6899999999999***********63..47889***************8877765.56899********************8764..445788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.874169262IPR003340B3 DNA binding domain
CDDcd100172.73E-18169260No hitNo description
Gene3DG3DSA:2.40.330.109.6E-22170262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21170263IPR015300DNA-binding pseudobarrel domain
PfamPF023628.8E-17171261IPR003340B3 DNA binding domain
SMARTSM010192.5E-18171262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-25385485IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-25386485IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-22391485No hitNo description
PROSITE profilePS5086314.057393487IPR003340B3 DNA binding domain
SMARTSM010192.7E-18393487IPR003340B3 DNA binding domain
PfamPF023622.6E-15395485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MRPLRRRGTS RCGLPNSSAR PPIPRPAAGQ IWATSDGTPF PERDAVGTLF PTTGTPSNVA  60
GTSSSHEVAM AGPRHCHSSN PVQERNVSCA TTGLRDVMAR KNQQGISSAA AAAKESMMKK  120
ESGMEKEKEK GNEERKEKGR KEKNNGREGR KEKKGRKEAK EGDALGAGRR FFKIFFPHHS  180
GERLKIPQPF CKYLKEEANR PVSMKGPSGN TWQLMLTSVE EGLGFTKGWK EFVGDHSLQQ  240
GHFLVFTYDG HSEFSVVVFS KSGTEDELTL YSQPSEVEEG AQDADAAGAL EHEASALPSE  300
EGNGKTRKRL RQGMVKSPAP KRHLSVQKQP EKRKPEAFVD TSKAGSSVPD SNKVVSKKFR  360
QPVVISQRCR ITEEEKSHAL KRATEFKSKN PFTLQVMMAS YVYLGLFMNI PSEFVREYLP  420
QTSKKMTLWD PQGKPWEVQY VYHERSVAAF SGGWGKFAVG NNLEEFDVCL FEFLKEDNIK  480
VHIYRVVHQI TPLLRSKSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1437148627142B3 domain-containing transcription factor VRN1
4i1k_B7e-1437148627142B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134141RKEKGRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462925057
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827675.11e-137B3 domain-containing protein Os11g0197600-like
RefseqXP_025827676.11e-137B3 domain-containing protein Os11g0197600-like
SwissprotQ2R9D25e-99Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0A9DCS31e-139A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGPavir.Ha01581.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]