PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462924991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HB-other | ||||||||
Protein Properties | Length: 599aa MW: 65623.3 Da PI: 6.5914 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16 | 2.1e-05 | 375 | 435 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 rrkRt +++eq++e e++ ++ + ++ + ++kl ++t +q k+W Nr+ak 462924991 375 RRKRTIMNDEQINEIEKALVDEPEMhkNTPLLQAWSEKLsvqgpEITASQLKNWLNNRKAK 435 89****************9986666114556889999999999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 356 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.85E-5 | 372 | 441 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.252 | 372 | 439 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-4 | 374 | 443 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.31E-4 | 375 | 438 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
PAGAKLAASH FLRFLLRSSS SLSSSPSPAH WRGSVAEIQL ARTPLRRPKM IDMVSAVEEL 60 SSLTTKELSE MLKEPDNFIL QSKTEDGGPK QVLLDDVKLS EQVMDLIFFL LSILAQRKKG 120 STDIVASVSR LKAKILSILL QLCEAESVSY LDEVATSPNS MQLGHTLALE VLDLLKTAFG 180 RKQTHNVDSH DKSYPMGSVL ISALRLVDVF SDDSNFRSSF MTNTVVQHAT SSETKEDLHP 240 LQQPLPTVAS ARDSSMNSIP KVEQSMEVST PAPLIKQEAT GKEETPRNSA TKNGGFLQNA 300 VGQDLVHLGV ARTTSAGYTP VSNVLNPGHQ RIKMDLDPAS SSAEHFKTPE LTKESGLQED 360 EKGEANMYDD RQPKRRKRTI MNDEQINEIE KALVDEPEMH KNTPLLQAWS EKLSVQGPEI 420 TASQLKNWLN NRKAKLARIA KERGVPYDGE IADKPSTPAT HLGESSESAG EDSYLPPARV 480 MTALGISKGS RLVSPDSSEP SRPLTRSFSF EPGRLVILID GDGKEVGRGK ISPVEGRGQG 540 KSLVESRVCV VDITELKIEK WRELPHPSEA SGRTFQEAES RNGGVMRVAW DVSRLSPVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462924991 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979857.1 | 0.0 | nodulin homeobox isoform X1 | ||||
Refseq | XP_022684920.1 | 0.0 | nodulin homeobox isoform X2 | ||||
TrEMBL | K3ZH85 | 0.0 | K3ZH85_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J17044.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Si025937m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5126 | 14 | 18 |