PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462924561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bZIP | ||||||||
Protein Properties | Length: 211aa MW: 23551.4 Da PI: 8.9414 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 15 | 62 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l 462924561 15 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 62 9****************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-14 | 11 | 75 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 13 | 76 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.8E-9 | 15 | 63 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.49E-11 | 15 | 66 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-8 | 15 | 60 | No hit | No description |
CDD | cd14703 | 9.44E-22 | 16 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSPEQLAELA AIDPKRAKRI LANRQSAARS KERKARYITE LERKVQTLQT EATTLSAQLT 60 LFQRDTTGLS TENAELKIRL QAMEQQAQLR DALNDALKQE LERLKLATGE VTNSNETYNM 120 RFQHIPYNSS FFPLSQQNTA HNQGGSQLPP AFHPPHPNVP SHQMLSHPNT LQDIMQQDSI 180 GRFQGLDIGK GPLVVKSESS SISASESSSN F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462924561 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795608.1 | 1e-126 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-119 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0A9ITV0 | 1e-128 | A0A0A9ITV0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ib01574.1.p | 1e-126 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 3e-64 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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