PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 186aa MW: 19349.8 Da PI: 8.5828

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462924093	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.7	7.9e-19	37	77	1	41
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasn 41 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasn 462924093 37 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASN 77 7**************************************98 PP
2	DUF260	29.5	2e-09	77	112	64	99
DUF260 64 eAearardPvyGavgvilklqqqleqlkaelallke 99 +A++r+rdPvyG+vgvi+ lq++l+ql+++la++k 462924093 77 NADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKY 112 69*****************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.705	36	135	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-18	37	77	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-7	77	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MASSSASSMP APSGSVITVA TSSSSAAAAA VCGTGSPCAA CKFLRRKCQP DCVFAPYFPP 60 DNPQKFVHVH RVFGASNADM RLRDPVYGCV GVISILQHNL RQLQQDLARA KYELSKYQDQ 120 FASAQMLSRS YDGEPIARLG INGGYEFGYS TSMGGAGPVS GLGTLGLSPF LKSGTAGGDE 180 KPSAGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-34	27	117	1	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-34	27	117	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462924093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY940681	3e-66	AY940681.1 Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds.
GenBank	EF081454	3e-66	EF081454.1 Zea mays indeterminate gametophyte 1 (IG1) gene, complete cds.
GenBank	EU964817	3e-66	EU964817.1 Zea mays clone 281759 mRNA sequence.
GenBank	EU966092	3e-66	EU966092.1 Zea mays clone 291632 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105838.1	1e-98	LOB domain-containing protein 6
Refseq	XP_008673456.1	1e-98	LOB domain-containing protein 6 isoform X1
Refseq	XP_020405662.1	1e-98	LOB domain-containing protein 6 isoform X1
Swissprot	Q32SG3	1e-99	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	A0A2T7DDD6	1e-104	A0A2T7DDD6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6RGB0	1e-104	A0A3L6RGB0_PANMI; LOB domain-containing protein 6
STRING	GRMZM2G118250_P06	4e-98	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-37	ASYMMETRIC LEAVES 2-like 1