PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462922248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 178aa MW: 19475.8 Da PI: 7.424 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 119.9 | 1.1e-37 | 41 | 130 | 5 | 94 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++ lP+an++r+m++v+P++ kis ak+++++c++ef++fv++eas+ + +++r+ti+++d+ wa+ lGf+dyv+p+++y+++yre++ 462922248 41 NNGLPMANLVRLMRQVIPTQVKISTRAKQLTHDCAVEFVGFVGGEASECAVEQHRRTIAPEDFTWAFERLGFDDYVDPMTTYIRRYRETQ 130 6779***********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-27 | 41 | 131 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.05E-24 | 43 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-14 | 44 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MGRKAKRGKK LCCTKGARGE KRPANHEGSD GEEHDATAAG NNGLPMANLV RLMRQVIPTQ 60 VKISTRAKQL THDCAVEFVG FVGGEASECA VEQHRRTIAP EDFTWAFERL GFDDYVDPMT 120 TYIRRYRETQ HVLGGTSCSF APAPAGGSCS FTGEEMQFLR SGQAPPLAEQ SYGYDGQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-27 | 34 | 128 | 3 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462922248 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822765.1 | 7e-52 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q6Z348 | 3e-38 | NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | A0A2T8KXK0 | 2e-50 | A0A2T8KXK0_9POAL; Uncharacterized protein | ||||
STRING | MLOC_75867.1 | 1e-46 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13659 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-30 | nuclear factor Y, subunit B6 |