PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462922215
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 230aa    MW: 24302 Da    PI: 10.9557
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462922215genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.45e-363190362
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               e+ +kcprC+stntkfCyynny+lsqPr+fCk   ryWtkGG lrnvPvGgg+rk k+ss
  462922215 31 EAGVKCPRCESTNTKFCYYNNYNLSQPRHFCKPPPRYWTKGGVLRNVPVGGGCRKAKRSS 90
               5679****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-223183IPR003851Zinc finger, Dof-type
PfamPF027013.3E-303388IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.0183488IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQEFQSIPGL AGRLFGGAGG XXXXXXXXAR EAGVKCPRCE STNTKFCYYN NYNLSQPRHF  60
CKPPPRYWTK GGVLRNVPVG GGCRKAKRSS PSSSSSAPST PTSNEAHKNP RRGGWXXXXX  120
RHRHAVVEQR PRHEPLLDGR RGGAAGAHIR RPGGGAGVAL RASPAAAAPG VQLRRGAALQ  180
GRRFGAAGGG AAGLDAGIFD EQLGDASAAA AYWNAGSCWT DVQDPTVYLP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462922215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9554934e-66AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.16e-27DNA binding with one finger 2.4