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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462921758 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 20497.8 Da PI: 10.5065 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.8 | 2.9e-30 | 2 | 100 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv tpsdv+k++rlv+pk++ae+h +g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+++ 462921758 2 FDKVVTPSDVGKLNRLVIPKQHAEKHfplqlpviaaaavSG-ECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRSA- 99 89***************************999999988633.34889*************************************************543. PP SE CS B3 88 se 89 + 462921758 100 -G 100 .3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.14E-29 | 1 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-27 | 1 | 105 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-38 | 1 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-21 | 2 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-27 | 2 | 100 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.887 | 2 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MFDKVVTPSD VGKLNRLVIP KQHAEKHFPL QLPVIAAAAV SGECKGVLLN FEDAAGKVWR 60 FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DAVGFYRSAG KQLFIDCKVR PRTTGAAAFL 120 NAAASPSTVK AVRLFGVDLV TTPTRPASAA PVQEDMMAMN KRPRDFIAAS TPHMFFKKQC 180 IDFALT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-49 | 1 | 110 | 13 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462921758 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099639 | 1e-104 | FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961326.1 | 1e-105 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
Swissprot | Q8RZX9 | 4e-76 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A2T7EAR2 | 1e-104 | A0A2T7EAR2_9POAL; Uncharacterized protein | ||||
STRING | Si024576m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 4e-54 | related to ABI3/VP1 2 |