PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

462921062

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GeBP

Protein Properties

Length: 938aa MW: 104154 Da PI: 9.19

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462921062	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	53.2	8.5e-17	2	58	42	97
DUF573 42 kksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 ++++++++sksqlveK+rrLK+K++++v++ ++sg+ +sf+++h+q ife+++ iW+ 462921062 2 RRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAFSFRSPHEQAIFEIARNIWR 58 7899************************8999********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.5E-15	2	57	IPR007592	Protein of unknown function DUF573
PROSITE profile	PS51467	10.997	248	321	IPR010003	HARP domain
Gene3D	G3DSA:3.40.50.300	2.2E-15	349	539	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00487	2.1E-15	357	550	IPR014001	Helicase superfamily 1/2, ATP-binding domain
SuperFamily	SSF52540	5.48E-35	358	595	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS51192	14.898	370	542	IPR014001	Helicase superfamily 1/2, ATP-binding domain
CDD	cd00046	2.59E-8	380	524	No hit	No description
Pfam	PF00176	1.7E-26	380	642	IPR000330	SNF2-related, N-terminal domain
SuperFamily	SSF52540	6.65E-45	484	545	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.9E-17	636	803	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00079	1.23E-17	647	778	No hit	No description
SuperFamily	SSF52540	6.65E-45	648	818	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS51194	13.85	661	813	IPR001650	Helicase, C-terminal
Pfam	PF00271	2.1E-13	662	770	IPR001650	Helicase, C-terminal
SMART	SM00490	1.3E-18	687	770	IPR001650	Helicase, C-terminal
SuperFamily	SSF52540	8.21E-10	844	905	IPR027417	P-loop containing nucleoside triphosphate hydrolase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRDSGDAFS FRSPHEQAIF EIARNIWRPA 60 NKHGRDPAAD SDDEEAVGAA SAAAVAAPVP ANTSPNGEVK SPSSGRQRRR RRATEVATAA 120 GTAPVINVVQ PPQPAQLPVS VPVKMEDSLP ALSQAPMPVT VTMDGSEPLR LPVMSPQSGV 180 LDAEKNGLTP LFKEMIRAVI NVGVNPFGAK LPEPPLGLSM EGEKWKKQRI LELEVYLKRI 240 ELLQDQGSSP KISIHLSLHS SGMIAAKFIY NQQIVNAFHK IPKACWNARE RVWMFPASSL 300 STAEEVLHSV PELAVEIHKL DPLVQRALVA ASGAKDLQDI DITFIGEGLY DRIPNEVESK 360 LMPFQREGVR FVLQHGGRAL IADEMGLGKT LQAIAVASCF RDAWPVLVIT PSALRLQWAS 420 MIQNWLNIPT EDILVVLPQT GGSNKAGFRL VYSNSKGDFR LDGLFNVISY DVVPKIQSTL 480 LDLDFKIVIA DESHFLKNSV AKRTIASLPV LQKASYVVLL SGTPALSRPI ELFTQLQALY 540 PSVYKNVNDY GNRYCRGGFF GLYQGASNHE ELHNLMKTTV MIRRLKKDVL SQLPVKRRQQ 600 VFLDLSEKEM KPIRALSCEL ETLKMKIQSA DSKEMVDSLK LTQKNLISKM YTDSAVAKIP 660 AVLDYLGTVT EANCKFLVFA HHLPLINAIE QYLLKKKVKC IRIDGQTPTT TRQSLVTDFQ 720 NNDDIRAAVL SIKAGGVGLT LTAASTVIFA ELSWTPGDLI QAEDRAHRIG QVSSVNIYYL 780 LANETVDDMI WETVQGKLEN LGQMLDGQEK TLDVSQIDGR PSPSKQQKTL DGYLKRCSAP 840 TDGDLIQAED RAHRIGQVSS VNIYYLLANE TVDDMIWETV QGKLENLGQM LDGQEKTLDV 900 SQIDGRPSPS KQQKTLDGYL KRCSAPTDGQ PHRKHPRF

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRDSGDAFS FRSPHEQAIF EIARNIWRPA  60
NKHGRDPAAD SDDEEAVGAA SAAAVAAPVP ANTSPNGEVK SPSSGRQRRR RRATEVATAA  120
GTAPVINVVQ PPQPAQLPVS VPVKMEDSLP ALSQAPMPVT VTMDGSEPLR LPVMSPQSGV  180
LDAEKNGLTP LFKEMIRAVI NVGVNPFGAK LPEPPLGLSM EGEKWKKQRI LELEVYLKRI  240
ELLQDQGSSP KISIHLSLHS SGMIAAKFIY NQQIVNAFHK IPKACWNARE RVWMFPASSL  300
STAEEVLHSV PELAVEIHKL DPLVQRALVA ASGAKDLQDI DITFIGEGLY DRIPNEVESK  360
LMPFQREGVR FVLQHGGRAL IADEMGLGKT LQAIAVASCF RDAWPVLVIT PSALRLQWAS  420
MIQNWLNIPT EDILVVLPQT GGSNKAGFRL VYSNSKGDFR LDGLFNVISY DVVPKIQSTL  480
LDLDFKIVIA DESHFLKNSV AKRTIASLPV LQKASYVVLL SGTPALSRPI ELFTQLQALY  540
PSVYKNVNDY GNRYCRGGFF GLYQGASNHE ELHNLMKTTV MIRRLKKDVL SQLPVKRRQQ  600
VFLDLSEKEM KPIRALSCEL ETLKMKIQSA DSKEMVDSLK LTQKNLISKM YTDSAVAKIP  660
AVLDYLGTVT EANCKFLVFA HHLPLINAIE QYLLKKKVKC IRIDGQTPTT TRQSLVTDFQ  720
NNDDIRAAVL SIKAGGVGLT LTAASTVIFA ELSWTPGDLI QAEDRAHRIG QVSSVNIYYL  780
LANETVDDMI WETVQGKLEN LGQMLDGQEK TLDVSQIDGR PSPSKQQKTL DGYLKRCSAP  840
TDGDLIQAED RAHRIGQVSS VNIYYLLANE TVDDMIWETV QGKLENLGQM LDGQEKTLDV  900
SQIDGRPSPS KQQKTLDGYL KRCSAPTDGQ PHRKHPRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ne3_W	2e-37	360	798	14	458	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462921062

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958449.1	0.0	DNA annealing helicase and endonuclease ZRANB3
TrEMBL	K3ZR54	0.0	K3ZR54_SETIT; Uncharacterized protein
STRING	Si029084m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-16	DNA-binding storekeeper protein-related transcriptional regulator