PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 268aa MW: 29243.4 Da PI: 7.6298

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462920550	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.2e-31	31	89	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ 462920550 31 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 89 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.925	25	91	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.3E-31	28	91	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	28	91	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	30	90	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	32	89	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MNTWKNQARK VVCIPAPTAA GGRPTGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK 60 GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRNHHGKNGS GSGSKSSQNE 120 KQKQQNVKEE SKDQATTTAT STITTTTSTS PVAAVKEEAL AGSEALGRPM DTTGAVNHDN 180 IGLMDHVFSE SYKPMIPEAG QPDDFFSDLA ELESDPMNLI FSKEYMEAKP GGVDHAKEKA 240 ITKDLDPFEM LDWSNTSSAG SSFEQGKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-26	5	92	2	80	Disease resistance protein RRS1
5w3x_D	8e-26	5	92	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462920550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683942.1	1e-140	probable WRKY transcription factor 14
Swissprot	O64747	1e-63	WRK35_ARATH; Probable WRKY transcription factor 35
Swissprot	Q9SA80	1e-63	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A1E5VDC2	1e-142	A0A1E5VDC2_9POAL; Putative WRKY transcription factor 35
STRING	Si011735m	1e-139	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-62	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]