PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462920409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 18275 Da PI: 4.9163 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 21 | 72 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +GVr ++ +g ++AeIrdp + ++r++lg+f+t+e+Aa+a++aa+++++g+ 462920409 21 TKLRGVRKRP-WGTYAAEIRDPAN---QARVWLGTFDTPEQAARAYDAAARRFRGA 72 578*******.**********843...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-14 | 21 | 56 | No hit | No description |
Pfam | PF00847 | 1.0E-12 | 22 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-18 | 22 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.234 | 22 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-27 | 22 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-26 | 23 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAPNSSPSSS SAWNAAATAG TKLRGVRKRP WGTYAAEIRD PANQARVWLG TFDTPEQAAR 60 AYDAAARRFR GARATATTNS PADDDPAARG GSAVVSASSS SSTAPVVTTA RLGATRRRPS 120 LLLDLNVEAP SDEAEAQTTD SVSSSSSVVL DDAAPPAVNL GLDLNLPPPA HDDDMLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-19 | 20 | 74 | 3 | 58 | ATERF1 |
3gcc_A | 6e-19 | 20 | 74 | 3 | 58 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462920409 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949013 | 1e-47 | EU949013.1 Zea mays clone 393795 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010535074.1 | 2e-27 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3L6SVL7 | 2e-28 | A0A3L6SVL7_PANMI; Ethylene-responsive transcription factor 11-like | ||||
STRING | XP_010535074.1 | 8e-27 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 5e-17 | ERF domain protein 11 |