PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462920409
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 177aa    MW: 18275 Da    PI: 4.9163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462920409genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-192172156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++ +GVr ++ +g ++AeIrdp +   ++r++lg+f+t+e+Aa+a++aa+++++g+
  462920409 21 TKLRGVRKRP-WGTYAAEIRDPAN---QARVWLGTFDTPEQAARAYDAAARRFRGA 72
               578*******.**********843...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-142156No hitNo description
PfamPF008471.0E-122271IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-182275IPR016177DNA-binding domain
PROSITE profilePS5103222.2342281IPR001471AP2/ERF domain
SMARTSM003806.0E-272287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-262375IPR001471AP2/ERF domain
PRINTSPR003672.8E-92334IPR001471AP2/ERF domain
PRINTSPR003672.8E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAPNSSPSSS SAWNAAATAG TKLRGVRKRP WGTYAAEIRD PANQARVWLG TFDTPEQAAR  60
AYDAAARRFR GARATATTNS PADDDPAARG GSAVVSASSS SSTAPVVTTA RLGATRRRPS  120
LLLDLNVEAP SDEAEAQTTD SVSSSSSVVL DDAAPPAVNL GLDLNLPPPA HDDDMLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-192074358ATERF1
3gcc_A6e-192074358ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462920409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490131e-47EU949013.1 Zea mays clone 393795 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535074.12e-27PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A3L6SVL72e-28A0A3L6SVL7_PANMI; Ethylene-responsive transcription factor 11-like
STRINGXP_010535074.18e-27(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.15e-17ERF domain protein 11