PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919311

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 520aa MW: 57134.2 Da PI: 8.8264

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919311	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.3	2.5e-11	234	263	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le+ 462919311 234 KTLRRLAQNREAARKSRLRKKAYIQQLETS 263 788************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-8	227	273	No hit	No description
SMART	SM00338	2.4E-8	230	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.841	232	276	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.72E-20	234	286	No hit	No description
Pfam	PF00170	4.5E-8	234	263	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.27E-7	234	269	No hit	No description
PROSITE pattern	PS00036	0	237	252	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-27	319	392	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MVWAVIRASQ GARLEKKTTT IVNLSSPTEF PKHLTAGDDS IFHHGFDNSR IVACGRRSYK 60 VWAPIVFLFV GSKESASSYD MAEFDQSAIF LYLDGHDQAS IQEQRQTLNI FPSQPMHVGE 120 PIPAKVRYCM QKLDIYIPIS AKVAAQHADP EDVQIGVQGG SMGMAKALLA NGNHSSPKRP 180 EQGGQRSLVP SPPGLSVPAP KENKSAVTIA KKEATSSGGK GAGSSDQERV KDPKTLRRLA 240 QNREAARKSR LRKKAYIQQL ETSRIRLSQL EQQVQTARVQ GVFSGTGGQL AGFPSAPSPA 300 VAIFDIEYAR WVEEHSKLMF QLRAALNEPL ADDQLQGFVN AAMAQHEELL NLKGAIARAD 360 VFHLLSGVWA TPAERCFLWL GGFRPSEVIK VMLKHVEPLS EGQILGIYNL QQSLQEREEA 420 LSHGIDAIQH NISDIVAAPD VAPASFMDQM SLAMNKVASM EGLVRQADGL RQQTLHKLHE 480 ILTTQQAARC LVAIADYFHH LRALSTLWVA RPRQEDGPVL

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MVWAVIRASQ GARLEKKTTT IVNLSSPTEF PKHLTAGDDS IFHHGFDNSR IVACGRRSYK  60
VWAPIVFLFV GSKESASSYD MAEFDQSAIF LYLDGHDQAS IQEQRQTLNI FPSQPMHVGE  120
PIPAKVRYCM QKLDIYIPIS AKVAAQHADP EDVQIGVQGG SMGMAKALLA NGNHSSPKRP  180
EQGGQRSLVP SPPGLSVPAP KENKSAVTIA KKEATSSGGK GAGSSDQERV KDPKTLRRLA  240
QNREAARKSR LRKKAYIQQL ETSRIRLSQL EQQVQTARVQ GVFSGTGGQL AGFPSAPSPA  300
VAIFDIEYAR WVEEHSKLMF QLRAALNEPL ADDQLQGFVN AAMAQHEELL NLKGAIARAD  360
VFHLLSGVWA TPAERCFLWL GGFRPSEVIK VMLKHVEPLS EGQILGIYNL QQSLQEREEA  420
LSHGIDAIQH NISDIVAAPD VAPASFMDQM SLAMNKVASM EGLVRQADGL RQQTLHKLHE  480
ILTTQQAARC LVAIADYFHH LRALSTLWVA RPRQEDGPVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919311

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698769.1	0.0	transcription factor TGAL7 isoform X1
Swissprot	Q6H434	0.0	TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBL	A0A1E5WJ13	0.0	A0A1E5WJ13_9POAL; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	Si029966m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-125	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]