PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462919248
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 304aa    MW: 33416.4 Da    PI: 5.9057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462919248genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16111162155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+e A++Y+++L+
  462919248 111 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVEGAINYVRELE 162
                79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-14109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-16109166No hitNo description
PROSITE profilePS5088816.736110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17110174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-13111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALEAVVYSQ PQGHFSYGRR DSSYALPWSS WCDTGAFGVA EPCADDEWDP LLLASLVQDA  60
EGSGEELVAS DGASPAASAD ALAPVMQQTT TTRRKRRRTK IVKNEEEIES QRMTHIAVER  120
NRRRQMNDYL AVLRSLMPPS YAQRGDQASI VEGAINYVRE LEHLLQSLEV QKSFKDRGCN  180
ADDGGQSPFA GFFSFSQYST SSASHGSNGH RIQAESTATA DIEASMVEGH ASLKVQVQRR  240
SRQLIRLTAG LQQLGLTTLH LNVSTAGATG MYSFSLKVSD CYCIFWTLTD LILYTTLTAN  300
LCLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRRR
29398RKRRRT
3111122RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462919248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983211.11e-118transcription factor bHLH96
SwissprotQ9C7T42e-59BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9JFW21e-121A0A0A9JFW2_ARUDO; Uncharacterized protein
STRINGPavir.Ib02778.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]