PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462917185
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 697aa    MW: 80802.8 Da    PI: 8.4858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462917185genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06673696326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C+f++++G+C+y ++C ++H+
  462917185 673 RKPCNFYYKNGWCRYEENCWYSHD 696
                79*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689064.21E-6135175No hitNo description
Gene3DG3DSA:1.10.720.301.9E-7136175IPR003034SAP domain
PROSITE profilePS508008.728140174IPR003034SAP domain
PfamPF020375.8E-7140174IPR003034SAP domain
PROSITE profilePS5010313.742670697IPR000571Zinc finger, CCCH-type
SMARTSM003560.0091671697IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5671696IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4672696IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4673696IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MAAASAAGDP RALRLPQSPE ERREEDESEE EEEVESGEED EGDVEGSEVA SLADLCDPDT  60
GSDDDPTFDP DADGDLEVEA VLRSRMSRMS ISASARKGRK GSAVPKMEKE DIDLLAMVDK  120
LIKVVDMDIV AMYLCADGQL EKLKVYECKS YLRMHKLRLT GKKEVLLNRI REHIEVKNAG  180
EVKYPVSSFV LNCKGDACKG DVVMFEQNIY RRKKGAPREV KRLCGQRTNA GRIIKESYGT  240
AKQQHTFTIE ILWSKGYKPW PPLHPLLIKG RNLYKDKTMR QPWTDEEERN RVLQEKHARG  300
FVARKSRASR IEDKEIERKM KFNRIKENKA KEQQGMNQKQ YIKVVPQLTV DPITTVHQRF  360
LGSISFIIVV TDERKYPSLQ NGERGNTMQQ HIPLKVIPTQ HNEVLPLKVG ARSFKQECNE  420
GPSIQPGGLQ KQMHQQATHT EQMFKDSHQQ PRYQNQAEGL QQEGAMGTYS KECTDGQAPS  480
QHNGGSGNAR HHQISSKLST SQQTSKYPQQ PPNHQCHNDV RSYRGEVDYQ NNRYRTAEYS  540
ERVCQPRGNS TQHANAHQRG SNCHQNAPAD HSLHQPLRSR NQNFSSRDQY YGQGYYHQYT  600
NGYRRMAREQ YHPQGPQQNQ HQNEYNHWHT TQYQYHTQQN QHQNYGDDRR TNHKQHYHEQ  660
NQPQQHPIQP SQRKPCNFYY KNGWCRYEEN CWYSHDF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462917185
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986580.20.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A368SKH20.0A0A368SKH2_SETIT; Uncharacterized protein
TrEMBLK4AMX10.0K4AMX1_SETIT; Uncharacterized protein
STRINGSi040267m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]