PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462917185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 697aa MW: 80802.8 Da PI: 8.4858 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 673 | 696 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++++G+C+y ++C ++H+ 462917185 673 RKPCNFYYKNGWCRYEENCWYSHD 696 79*******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 4.21E-6 | 135 | 175 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 1.9E-7 | 136 | 175 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 8.728 | 140 | 174 | IPR003034 | SAP domain |
Pfam | PF02037 | 5.8E-7 | 140 | 174 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 13.742 | 670 | 697 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0091 | 671 | 697 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 671 | 696 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 672 | 696 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 673 | 696 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MAAASAAGDP RALRLPQSPE ERREEDESEE EEEVESGEED EGDVEGSEVA SLADLCDPDT 60 GSDDDPTFDP DADGDLEVEA VLRSRMSRMS ISASARKGRK GSAVPKMEKE DIDLLAMVDK 120 LIKVVDMDIV AMYLCADGQL EKLKVYECKS YLRMHKLRLT GKKEVLLNRI REHIEVKNAG 180 EVKYPVSSFV LNCKGDACKG DVVMFEQNIY RRKKGAPREV KRLCGQRTNA GRIIKESYGT 240 AKQQHTFTIE ILWSKGYKPW PPLHPLLIKG RNLYKDKTMR QPWTDEEERN RVLQEKHARG 300 FVARKSRASR IEDKEIERKM KFNRIKENKA KEQQGMNQKQ YIKVVPQLTV DPITTVHQRF 360 LGSISFIIVV TDERKYPSLQ NGERGNTMQQ HIPLKVIPTQ HNEVLPLKVG ARSFKQECNE 420 GPSIQPGGLQ KQMHQQATHT EQMFKDSHQQ PRYQNQAEGL QQEGAMGTYS KECTDGQAPS 480 QHNGGSGNAR HHQISSKLST SQQTSKYPQQ PPNHQCHNDV RSYRGEVDYQ NNRYRTAEYS 540 ERVCQPRGNS TQHANAHQRG SNCHQNAPAD HSLHQPLRSR NQNFSSRDQY YGQGYYHQYT 600 NGYRRMAREQ YHPQGPQQNQ HQNEYNHWHT TQYQYHTQQN QHQNYGDDRR TNHKQHYHEQ 660 NQPQQHPIQP SQRKPCNFYY KNGWCRYEEN CWYSHDF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462917185 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986580.2 | 0.0 | zinc finger CCCH domain-containing protein 62 | ||||
Swissprot | Q338N2 | 0.0 | C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62 | ||||
TrEMBL | A0A368SKH2 | 0.0 | A0A368SKH2_SETIT; Uncharacterized protein | ||||
TrEMBL | K4AMX1 | 0.0 | K4AMX1_SETIT; Uncharacterized protein | ||||
STRING | Si040267m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13107 | 20 | 22 |
Publications ? help Back to Top | |||
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