PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 354aa MW: 36682.2 Da PI: 6.5665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462917019	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.5	4.7e-19	66	111	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l 462917019 66 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKML 111 7*******************************************98 PP
2	DUF260	113.6	1.3e-35	114	206	8	100
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lqqq+++l+ael+++++e 462917019 114 LRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEAERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNSLEAELDAIRAE 206 89*************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.497	65	207	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-18	66	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-35	114	204	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQQALSDNSD CWASTRERLD EIGKKIKREP DAAGISALAA SASTAPAENP VPRRLGLGGA 60 LNTVTPCAAC KLLRRRCAQE CPFAPYFSPH EPHKFAAVHK VFGASNVSKM LLLLRRRCAQ 120 ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLEVPEAER ADAASSLVYE ANLRLRDPVY 180 GCMGAISVLQ QQVNSLEAEL DAIRAEIFKH RYHQPGAGAS TGAAGLIDAA AQGRASFDVA 240 PGTPVHAGDV VSVVGAGQEA STVTGGATGA AGLVDDAAQA RASFDVAPGT PMHAGADVVS 300 VVGAAGQEAS TVAGAPGMPP SSAVYIAEAA EQPSSTTDHH YSSLNSSEHA AYFG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQQALSDNSD CWASTRERLD EIGKKIKREP DAAGISALAA SASTAPAENP VPRRLGLGGA  60
LNTVTPCAAC KLLRRRCAQE CPFAPYFSPH EPHKFAAVHK VFGASNVSKM LLLLRRRCAQ  120
ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLEVPEAER ADAASSLVYE ANLRLRDPVY  180
GCMGAISVLQ QQVNSLEAEL DAIRAEIFKH RYHQPGAGAS TGAAGLIDAA AQGRASFDVA  240
PGTPVHAGDV VSVVGAGQEA STVTGGATGA AGLVDDAAQA RASFDVAPGT PMHAGADVVS  300
VVGAAGQEAS TVAGAPGMPP SSAVYIAEAA EQPSSTTDHH YSSLNSSEHA AYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	113	210	17	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	113	210	17	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462917019

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	1e-122	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	2e-97	LOB domain-containing protein 15
Swissprot	Q8L5T5	2e-57	LBD15_ARATH; LOB domain-containing protein 15
Swissprot	Q9AT61	4e-57	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1E5VHX5	1e-110	A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRING	Si004575m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-58	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]