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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462917019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | LBD | ||||||||
Protein Properties | Length: 354aa MW: 36682.2 Da PI: 6.5665 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.5 | 4.7e-19 | 66 | 111 | 1 | 46 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l 462917019 66 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKML 111 7*******************************************98 PP | |||||||
2 | DUF260 | 113.6 | 1.3e-35 | 114 | 206 | 8 | 100 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lqqq+++l+ael+++++e 462917019 114 LRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEAERADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNSLEAELDAIRAE 206 89*************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.497 | 65 | 207 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-18 | 66 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-35 | 114 | 204 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MQQALSDNSD CWASTRERLD EIGKKIKREP DAAGISALAA SASTAPAENP VPRRLGLGGA 60 LNTVTPCAAC KLLRRRCAQE CPFAPYFSPH EPHKFAAVHK VFGASNVSKM LLLLRRRCAQ 120 ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLEVPEAER ADAASSLVYE ANLRLRDPVY 180 GCMGAISVLQ QQVNSLEAEL DAIRAEIFKH RYHQPGAGAS TGAAGLIDAA AQGRASFDVA 240 PGTPVHAGDV VSVVGAGQEA STVTGGATGA AGLVDDAAQA RASFDVAPGT PMHAGADVVS 300 VVGAAGQEAS TVAGAPGMPP SSAVYIAEAA EQPSSTTDHH YSSLNSSEHA AYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 113 | 210 | 17 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 113 | 210 | 17 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462917019 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121919 | 1e-122 | AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 2e-97 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-57 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 4e-57 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A1E5VHX5 | 1e-110 | A0A1E5VHX5_9POAL; LOB domain-containing protein 15 | ||||
STRING | Si004575m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-58 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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