 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462916905 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
WOX |
| Protein Properties |
Length: 231aa MW: 25783.5 Da PI: 8.8043 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462916905 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.3e-18 | 82 | 141 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++ +eq+++Le l++ r+p+ ++e ++++l +++ ++V++WFqN++a+e++
462916905 82 TRWNPCPEQIKVLEMLYRGgMRTPNSFQIECITEELgkygRIEGKNVFYWFQNHKARERQ 141
8*****************99**************************************97 PP
|
| 2 | Wus_type_Homeobox | 112.6 | 2.1e-36 | 81 | 143 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+tRW+P peQik+Le+ly+ G+rtPn+ +i+ it+eL +yG+ie+kNVfyWFQN+kaRerqkq
462916905 81 TTRWNPCPEQIKVLEMLYRGGMRTPNSFQIECITEELGKYGRIEGKNVFYWFQNHKARERQKQ 143
79***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MRLHHLHVAY SDKAAPSSSS SSISPSLPSS AIPLALQCLR PLAPKISFPE SRKMVVLPEF 60
ARVRNESRLL KYTVQVPMSG TTRWNPCPEQ IKVLEMLYRG GMRTPNSFQI ECITEELGKY 120
GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTTSSLPET KAAVLLLAML DGAEKKGVSE 180
EDAVSCKRRC KSWGDDVHGD RDGATEVADD CTNDEVTLEL FPLHPQGKAN N
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL442007 | 3e-76 | AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence. |
| GenBank | AL606635 | 3e-76 | AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence. |
| GenBank | AL606692 | 3e-76 | AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence. |
| GenBank | AP014960 | 3e-76 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 3e-76 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | JF836159 | 3e-76 | JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds. |
