PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916905
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 231aa    MW: 25783.5 Da    PI: 8.8043
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916905genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1882141357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++ +eq+++Le l++   r+p+  ++e ++++l    +++ ++V++WFqN++a+e++
  462916905  82 TRWNPCPEQIKVLEMLYRGgMRTPNSFQIECITEELgkygRIEGKNVFYWFQNHKARERQ 141
                8*****************99**************************************97 PP
2Wus_type_Homeobox112.62.1e-3681143365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +tRW+P peQik+Le+ly+ G+rtPn+ +i+ it+eL +yG+ie+kNVfyWFQN+kaRerqkq
          462916905  81 TTRWNPCPEQIKVLEMLYRGGMRTPNSFQIECITEELGKYGRIEGKNVFYWFQNHKARERQKQ 143
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.2E-479146IPR001356Homeobox domain
SuperFamilySSF466893.86E-1182147IPR009057Homeodomain-like
CDDcd000860.0057882143No hitNo description
PfamPF000466.9E-1682141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-683141IPR009057Homeodomain-like
PROSITE profilePS500719.00589142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MRLHHLHVAY SDKAAPSSSS SSISPSLPSS AIPLALQCLR PLAPKISFPE SRKMVVLPEF  60
ARVRNESRLL KYTVQVPMSG TTRWNPCPEQ IKVLEMLYRG GMRTPNSFQI ECITEELGKY  120
GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTTSSLPET KAAVLLLAML DGAEKKGVSE  180
EDAVSCKRRC KSWGDDVHGD RDGATEVADD CTNDEVTLEL FPLHPQGKAN N
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420073e-76AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066353e-76AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066923e-76AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149603e-76AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126123e-76CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361593e-76JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977039.11e-101WUSCHEL-related homeobox 4
SwissprotQ25AM29e-95WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV39e-95WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A0A9HK031e-107A0A0A9HK03_ARUDO; Uncharacterized protein
STRINGSi012229m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.18e-42WUSCHEL related homeobox 4