PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462916456

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 126aa MW: 13405.2 Da PI: 8.7453

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462916456	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	31.8	2.8e-10	99	119	2	22
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 dDg++WrKYGqK++ g++fpr 462916456 99 DDGFSWRKYGQKDILGAKFPR 119 8*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-8	90	119	IPR003657	WRKY domain
PROSITE profile	PS50811	9.408	93	119	IPR003657	WRKY domain
SuperFamily	SSF118290	1.18E-7	97	120	IPR003657	WRKY domain
SMART	SM00774	4.6E-4	98	125	IPR003657	WRKY domain
Pfam	PF03106	3.7E-7	99	120	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MQDGSAGGGD GGINLLLSIL ADGEEQARLL GELPDDPRLG AERYRGAARM LQCTLGKAVT 60 VAKAIEAAAS RAADSPRKGL PRWTAKFRVP DANLEATPDD GFSWRKYGQK DILGAKFPRV 120 SSCPIH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462916456

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964792.1	5e-47	uncharacterized protein LOC101764723
Refseq	XP_022681387.1	5e-47	uncharacterized protein LOC101764723
TrEMBL	A0A1E5W0A1	7e-47	A0A1E5W0A1_9POAL; Putative WRKY transcription factor 53
STRING	Si008812m	2e-46	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13340	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	2e-16	WRKY DNA-binding protein 30