PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462916357
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 223aa    MW: 24481.4 Da    PI: 6.0854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462916357genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.57e-1149713456
               HHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 34 AkklgLterqVkvWFqNrRakek 56
               A+ lgL+ rqV +WFqNrRa++k
  462916357 49 ARALGLQPRQVAIWFQNRRARWK 71
               889*******************9 PP
2HD-ZIP_I/II85.19.7e-28471073191
  HD-ZIP_I/II  31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  + ar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L +++++L++e+
    462916357  47 QRARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLDAVKADNDALLSHNKKLQAEI 107
                  569*******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000463.4E-84971IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-114980IPR009057Homeodomain-like
PROSITE profilePS5007111.4514973IPR001356Homeobox domain
SuperFamilySSF466891.41E-94982IPR009057Homeodomain-like
CDDcd000868.88E-104974No hitNo description
PfamPF021831.0E-1473112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MYDVGGGADE VNGGGANEDE LWXXXXXXXX XXXXXXXXXX XXXXXLQRAR ALGLQPRQVA  60
IWFQNRRARW KTKQLEKDYD VLKRQLDAVK ADNDALLSHN KKLQAEILAL KGGREAGSEL  120
INLNKETEAS CSNRSENSSE INLDISRTPP SEGAMDPPPP HQHAGNGGGG SMIPFYPSVG  180
RPAGGVDFDQ LLHSSSGPKM EPHGNGGVHQ APETPWADQQ HFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462916357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590411e-140AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597471e-140AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662451e-140AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
GenBankAK3673181e-140AK367318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054L16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796010.19e-87homeobox-leucine zipper protein HOX21-like isoform X2
SwissprotQ8S7W92e-79HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB51e-100A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-48HD-ZIP family protein