PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915915
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 309aa    MW: 35114.7 Da    PI: 5.0913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915915genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.4e-28958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l  +s
  462915915  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSQRLSHFS 58
               79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.086161IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.81E-36275No hitNo description
SuperFamilySSF554551.96E-29279IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SQRLSHFSGR  60
RRIEDVITRY INLPEHDRGG IVRNREVTYR ICAFVSYVEL QQEIRRYQHQ VQLTEERLRL  120
FEPDTAALTS MAEIEACEKF LMDTLARVED RKQYLLRNHI DPFDPSASDM QHVFLPPQHE  180
QQGDMAAVNA FGGDVVSSWF ADGMPSIFGG PDPDMSFSYT YDLRGQAIFD DPMRRDQHGP  240
SDDWQQAYTS AELLSALIPC TPFPLDDQDA MAPVLTSPMA PPPHVLEPVE AAGSADELAV  300
SNRSIPRLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17178179MEF2C
5f28_B1e-17178179MEF2C
5f28_C1e-17178179MEF2C
5f28_D1e-17178179MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915915
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751812e-90EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305679.11e-139agamous-like MADS-box protein AGL66 isoform X5
TrEMBLA0A194YI311e-138A0A194YI31_SORBI; Uncharacterized protein
STRINGSb10g007810.11e-133(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-60AGAMOUS-like 66